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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0366500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0503) R2 : 0.129
β1 : 0.278 (0.185) R2dD : 0.00452 R2D : 0.00645
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.05 (0.592) R2dE : 0.0998 R2E : 0.05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.68 (1.59) R2dD*E : 0.064 R2D*E : 0.0161
γ1 : -0.156 (0.108) R2dN8 : 0.00542 R2N8 : 0.00763
σ : 0.946
deviance : 407.79
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.1
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 0.946

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
403.58 0.944 3.2 0.317 0.129 3.91 1.16 7.71 -0.155 19.4 24.1 10 20 0.871
422.45 0.957 3.19 0.433 0.132 2.92 1.98 -- -0.135 19.5 24.84 39 20 1.38
406.07 0.946 3.2 0.283 0.182 3.95 -- 8.63 -0.153 16.8 24.1 53 20 0.786
432.16 0.975 3.19 0.384 0.189 2.78 -- -- -0.134 16.8 25 39 20 1.29
407.79 0.946 3.2 0.278 -- 4.05 -- 8.68 -0.156 -- 24.1 51 20 0.946
448.2 0.992 3.21 0.374 0.278 -- 1.81 -- -0.183 19.3 -- -- -- --
456.46 1 3.21 0.338 0.304 -- -- -- -0.177 18.1 -- -- -- --
434.01 0.975 3.19 0.378 -- 2.88 -- -- -0.137 -- 25 39 20 1.29
436.03 0.978 3.2 -- 0.184 2.72 -- -- -0.177 16.9 25 39 20 1.29
461.26 1 3.2 0.329 -- -- -- -- -0.184 -- -- -- -- --
459.47 1 3.21 -- 0.299 -- -- -- -0.215 18.1 -- -- -- --
437.78 0.978 3.2 -- -- 2.83 -- -- -0.179 -- 25 39 20 1.29
464.12 1.01 3.21 -- -- -- -- -- -0.221 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 405.09 temperature 25.0 10 < th dose dependent rect. 20 1
23 418.25 temperature 25.0 90 < th dose dependent rect. 12 8
30 419.95 temperature 25.0 10 < th dose independent rect. 20 1
32 420.22 temperature 25.0 90 < th dose independent rect. 18 1
37 421.29 temperature 20.0 10 < th dose independent rect. 9 11
41 421.33 temperature 20.0 10 < th dose independent rect. 15 5
102 425.14 humidity 70.0 4320 > th dose independent rect. 20 1
168 427.80 humidity 70.0 90 > th dose independent rect. 18 2
187 429.77 humidity 90.0 90 < th dose independent rect. 19 1
192 429.96 temperature 15.0 1440 > th dose independent rect. 20 1
196 429.98 temperature 30.0 1440 < th dose independent rect. 20 1
200 429.98 humidity 50.0 1440 > th dose independent rect. 20 1
206 429.98 atmosphere 995.0 1440 > th dose independent rect. 20 1
210 429.98 radiation 1.0 1440 < th dose independent rect. 20 1
230 429.98 temperature 10.0 1440 > th dose independent rect. 21 23
233 429.98 radiation 1.0 1440 < th dose dependent rect. 20 1
241 430.07 humidity 70.0 10 > th dose independent rect. 19 1
242 430.08 temperature 25.0 30 < th dose dependent rect. 1 20
251 430.32 radiation 40.0 43200 < th dose dependent rect. 20 1
277 430.98 wind 5.0 720 < th dose independent rect. 20 18
278 430.99 precipitation 0.1 90 < th dose independent rect. 19 1
280 430.99 precipitation 0.1 90 < th dose dependent rect. 19 1
283 431.05 temperature 20.0 10 < th dose independent rect. 1 20
287 431.16 wind 5.0 10 > th dose dependent rect. 19 1
288 431.21 atmosphere 1000.0 90 > th dose independent rect. 19 1
291 431.27 wind 5.0 720 < th dose independent rect. 20 15
312 431.57 wind 1.0 720 > th dose dependent rect. 24 13
335 431.88 wind 7.0 90 < th dose independent rect. 20 23
343 431.95 humidity 90.0 30 < th dose independent rect. 19 4
363 432.16 atmosphere 995.0 90 > th dose dependent rect. 19 1
371 432.23 wind 5.0 90 > th dose dependent rect. 12 1
379 432.32 wind 3.0 720 > th dose independent rect. 24 6
381 432.36 wind 1.0 720 > th dose dependent rect. 8 4
401 432.50 wind 5.0 90 > th dose independent rect. 12 1
407 432.54 wind 5.0 10 > th dose dependent rect. 19 11
414 432.58 wind 3.0 720 > th dose independent rect. 24 13
417 432.61 wind 5.0 10 > th dose independent rect. 17 21
418 432.63 wind 7.0 30 > th dose independent rect. 19 1
472 432.75 wind 5.0 720 < th dose independent sin 7 NA
504 433.02 wind 9.0 720 < th dose dependent rect. 20 19
521 433.17 temperature 25.0 90 < th dose dependent rect. 12 1
531 433.23 wind 5.0 720 < th dose independent rect. 23 9
540 433.36 humidity 90.0 30 < th dose independent rect. 19 12
549 433.46 wind 1.0 720 > th dose dependent rect. 1 3
575 433.57 temperature 25.0 10 < th dose independent rect. 12 2
595 433.71 humidity 50.0 90 > th dose dependent rect. 19 1
597 433.72 wind 5.0 720 > th dose independent sin 8 NA
606 433.82 temperature 15.0 90 > th dose independent rect. 20 23
613 433.85 wind 1.0 90 > th dose independent rect. 19 1
631 433.92 wind 9.0 90 < th dose independent rect. 19 1
632 433.93 temperature 10.0 90 > th dose independent rect. 19 1
635 433.93 humidity 50.0 90 > th dose independent rect. 19 1
638 433.93 atmosphere 1010.0 90 < th dose independent rect. 19 1
640 433.93 radiation 1.0 90 < th dose independent rect. 19 1
646 433.93 radiation 1.0 90 < th dose dependent rect. 19 1
652 433.94 humidity 90.0 30 < th dose independent rect. 19 19
656 433.95 wind 5.0 10 > th dose independent rect. 19 19
668 434.03 wind 3.0 720 > th dose dependent sin 7 NA
675 434.05 humidity 70.0 4320 > th dose independent rect. 20 4
676 434.05 wind 9.0 90 < th dose dependent rect. 19 1
684 434.07 humidity 90.0 30 < th dose independent rect. 19 9
721 434.17 humidity 70.0 90 > th dose independent rect. 18 15
800 434.54 wind 5.0 720 > th dose independent rect. 17 19
801 434.54 humidity 90.0 30 < th dose independent rect. 1 22
822 434.62 humidity 70.0 90 > th dose independent rect. 18 17
847 434.65 atmosphere 995.0 14400 < th dose dependent rect. 14 1
864 434.70 humidity 70.0 10 > th dose independent rect. 18 16
886 434.79 humidity 70.0 90 < th dose independent rect. 17 15
928 435.04 atmosphere 995.0 14400 > th dose independent rect. 8 6
943 435.10 wind 9.0 30 < th dose dependent rect. 20 23
945 435.12 wind 3.0 720 > th dose dependent rect. 17 20
948 435.14 wind 7.0 720 < th dose dependent sin 6 NA
987 435.30 wind 3.0 720 > th dose independent rect. 8 5
991 435.32 atmosphere 995.0 14400 > th dose independent rect. 12 2