Os09g0365900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupredoxin domain containing protein.
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Os09g0365900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupredoxin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 575.79 | 1.13 | 4.04 | 4.79 | 1.04 | -3.15 | 1.15 | 10.4 | 2.35 | 23.5 | 24.33 | 1232 | -- | -- |
| 652.99 | 1.19 | 4.12 | 5.02 | 0.727 | -3.47 | 1.6 | -- | 2.75 | 22.9 | 6.733 | 47520 | -- | -- |
| 580.69 | 1.12 | 4.02 | 4.8 | 1.11 | -3.2 | -- | 10.9 | 2.41 | 23.5 | 23.95 | 1171 | -- | -- |
| 663.82 | 1.2 | 4.12 | 4.93 | 0.718 | -3.45 | -- | -- | 2.74 | 22.9 | 2.16 | 47520 | -- | -- |
| 629.81 | 1.17 | 3.97 | 5.09 | -- | -2.91 | -- | 10.6 | 2.46 | -- | 24.11 | 1414 | -- | -- |
| 773.1 | 1.3 | 4.44 | 1.39 | 0.663 | -- | 1.49 | -- | 1.31 | 22.6 | -- | -- | -- | -- |
| 782.33 | 1.31 | 4.45 | 1.33 | 0.655 | -- | -- | -- | 1.31 | 22.6 | -- | -- | -- | -- |
| 658.14 | 1.19 | 4.21 | 2.9 | -- | -2.71 | -- | -- | 2.24 | -- | 16.61 | 8801 | -- | -- |
| 776.04 | 1.3 | 4.42 | -- | 0.585 | -2.25 | -- | -- | 1.43 | 18.7 | -8.334 | 47520 | -- | -- |
| 808.75 | 1.33 | 4.43 | 1.35 | -- | -- | -- | -- | 1.31 | -- | -- | -- | -- | -- |
| 829.21 | 1.35 | 4.48 | -- | 0.665 | -- | -- | -- | 1.16 | 22.8 | -- | -- | -- | -- |
| 768.07 | 1.29 | 4.4 | -- | -- | -1.29 | -- | -- | 1.44 | -- | 26.5 | 7154 | -- | -- |
| 856.54 | 1.37 | 4.46 | -- | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 574.21 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 576.25 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 3 |
| 5 | 576.47 | temperature | 25 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 63 | 579.39 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 65 | 579.54 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 69 | 579.69 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 90 | 580.19 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 110 | 580.35 | temperature | 30 | 43200 | > th | dose dependent | sin | 6 | NA |
| 116 | 580.54 | temperature | 30 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 118 | 580.56 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 119 | 580.59 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 123 | 580.75 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 124 | 580.75 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 128 | 580.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 130 | 580.77 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 155 | 580.92 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 178 | 581.20 | temperature | 30 | 43200 | < th | dose independent | sin | 6 | NA |
| 185 | 581.35 | temperature | 30 | 43200 | > th | dose independent | sin | 6 | NA |
| 271 | 581.91 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 283 | 582.24 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 384 | 582.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 385 | 582.73 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 478 | 582.75 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 484 | 582.78 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 572 | 583.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 18 |
| 578 | 583.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 581 | 583.55 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 611 | 583.69 | temperature | 25 | 43200 | > th | dose dependent | sin | 10 | NA |
| 616 | 583.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 645 | 583.88 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 710 | 584.14 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 809 | 584.22 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 817 | 584.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 818 | 584.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 840 | 584.25 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 858 | 584.26 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 862 | 584.27 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 877 | 584.27 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 21 |
| 884 | 584.27 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 931 | 584.30 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 953 | 584.42 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 23 |