Os09g0365300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0365300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.27 | 0.294 | 10.5 | 1.3 | 0.585 | 1.36 | -0.347 | 2 | 0.491 | 21.8 | 1.11 | 11499 | -- | -- |
| 42.86 | 0.305 | 10.5 | 0.777 | 0.47 | 1.17 | -0.269 | -- | 0.434 | 21.5 | 1.203 | 14213 | -- | -- |
| 39.44 | 0.292 | 10.5 | 1.32 | 0.614 | 1.4 | -- | 2.12 | 0.493 | 22 | 1.02 | 11535 | -- | -- |
| 43.27 | 0.306 | 10.5 | 0.828 | 0.505 | 1.13 | -- | -- | 0.434 | 21.6 | 1.2 | 14275 | -- | -- |
| 48.65 | 0.325 | 10.5 | 1.2 | -- | 1.69 | -- | 2.15 | 0.42 | -- | 1.1 | 15491 | -- | -- |
| 70.66 | 0.394 | 10.5 | 1.2 | 0.617 | -- | -0.237 | -- | 0.689 | 22.1 | -- | -- | -- | -- |
| 70.87 | 0.394 | 10.5 | 1.21 | 0.617 | -- | -- | -- | 0.689 | 22.2 | -- | -- | -- | -- |
| 52.35 | 0.337 | 10.5 | 0.801 | -- | 1.18 | -- | -- | 0.437 | -- | 1.209 | 15504 | -- | -- |
| 39.33 | 0.292 | 10.7 | -- | 0.599 | 1.35 | -- | -- | 0.0973 | 22 | 0.83 | 47520 | -- | -- |
| 93.95 | 0.453 | 10.5 | 1.22 | -- | -- | -- | -- | 0.69 | -- | -- | -- | -- | -- |
| 109.21 | 0.489 | 10.6 | -- | 0.623 | -- | -- | -- | 0.554 | 22.3 | -- | -- | -- | -- |
| 57.01 | 0.352 | 10.5 | -- | -- | 1.54 | -- | -- | 0.232 | -- | 0.8301 | 28410 | -- | -- |
| 132.89 | 0.538 | 10.5 | -- | -- | -- | -- | -- | 0.555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 35.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 3 | 36.07 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 13 | 36.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 23 | 36.72 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 29 | 36.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 154 | 37.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 185 | 37.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 192 | 38.01 | radiation | 1 | 43200 | < th | dose dependent | sin | 14 | NA |
| 194 | 38.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 196 | 38.06 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 202 | 38.10 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 216 | 38.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 261 | 38.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 274 | 38.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 277 | 38.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 8 |
| 281 | 38.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 286 | 38.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 298 | 38.31 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 309 | 38.32 | radiation | 1 | 14400 | > th | dose independent | sin | 5 | NA |
| 336 | 38.34 | radiation | 1 | 14400 | < th | dose independent | sin | 5 | NA |
| 345 | 38.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 346 | 38.34 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 360 | 38.36 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 400 | 38.39 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 406 | 38.40 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 411 | 38.41 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 3 |
| 412 | 38.42 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 512 | 38.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 520 | 38.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 554 | 38.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 562 | 38.58 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 617 | 38.62 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 665 | 38.65 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 673 | 38.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 675 | 38.66 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 676 | 38.66 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 695 | 38.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 712 | 38.70 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 717 | 38.70 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 723 | 38.71 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 742 | 38.72 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 829 | 38.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 907 | 38.75 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 20 | NA |
| 962 | 38.76 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 19 |