Os09g0364900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SNF1-related kinase complex anchoring protein SIP1.
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Os09g0364900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SNF1-related kinase complex anchoring protein SIP1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7.39 | 0.128 | 11.7 | 0.196 | 0.131 | -0.544 | 0.147 | -0.14 | 0.0949 | 9.87 | 8.748 | 131 | -- | -- |
| 7.41 | 0.127 | 11.7 | 0.216 | 0.131 | -0.543 | 0.133 | -- | 0.0996 | 9.77 | 8.084 | 132 | -- | -- |
| 7.47 | 0.127 | 11.7 | 0.21 | 0.128 | -0.543 | -- | -0.0799 | 0.097 | 9.78 | 7.901 | 138 | -- | -- |
| 7.47 | 0.127 | 11.7 | 0.221 | 0.128 | -0.543 | -- | -- | 0.1 | 9.78 | 7.903 | 138 | -- | -- |
| 7.99 | 0.132 | 11.7 | 0.2 | -- | -0.536 | -- | -0.164 | 0.0959 | -- | 5.556 | 317 | -- | -- |
| 10.3 | 0.15 | 11.7 | 0.107 | 0.194 | -- | 0.19 | -- | 0.0257 | 6.39 | -- | -- | -- | -- |
| 10.39 | 0.151 | 11.7 | 0.109 | 0.195 | -- | -- | -- | 0.025 | 6.3 | -- | -- | -- | -- |
| 8.01 | 0.132 | 11.7 | 0.224 | -- | -0.518 | -- | -- | 0.104 | -- | 15.2 | 317 | -- | -- |
| 8.63 | 0.137 | 11.7 | -- | 0.133 | -0.435 | -- | -- | 0.063 | 8.76 | 5.869 | 131 | -- | -- |
| 12.37 | 0.164 | 11.7 | 0.114 | -- | -- | -- | -- | 0.0292 | -- | -- | -- | -- | -- |
| 10.7 | 0.153 | 11.7 | -- | 0.197 | -- | -- | -- | 0.0129 | 6.27 | -- | -- | -- | -- |
| 9.25 | 0.142 | 11.7 | -- | -- | -0.456 | -- | -- | 0.0687 | -- | 14.89 | 309 | -- | -- |
| 12.72 | 0.166 | 11.7 | -- | -- | -- | -- | -- | 0.0166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.01 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 13 | 7.25 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 16 | 7.28 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 17 | 7.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 24 | 7.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 40 | 7.44 | temperature | 10.0 | 90 | > th | dose dependent | no | NA | NA |
| 60 | 7.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 66 | 7.52 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 82 | 7.56 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 83 | 7.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 86 | 7.57 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 169 | 7.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 192 | 7.72 | temperature | 10.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 198 | 7.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 319 | 7.84 | temperature | 30.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 438 | 7.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 534 | 8.01 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 536 | 8.01 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 569 | 8.03 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 570 | 8.03 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 665 | 8.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 739 | 8.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 815 | 8.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 816 | 8.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 827 | 8.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 955 | 8.21 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 981 | 8.22 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |