Os09g0364400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0364400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 370.86 | 0.905 | 7.86 | 5 | 5.49 | -3.53 | 1.16 | 6.34 | 1.39 | 17.3 | 23.71 | 1353 | -- | -- |
| 382.93 | 0.911 | 7.99 | 4.32 | 5.59 | -3.96 | 1.07 | -- | 1.27 | 17.3 | 17.87 | 5518 | -- | -- |
| 374.05 | 0.901 | 7.87 | 4.98 | 5.51 | -3.52 | -- | 6.24 | 1.38 | 17.3 | 23.86 | 1365 | -- | -- |
| 378.58 | 0.906 | 8.02 | 3.51 | 5.64 | -3.23 | -- | -- | 1.11 | 17.2 | 21.63 | 5625 | -- | -- |
| 1905.1 | 2.03 | 7.76 | 5.13 | -- | -4.53 | -- | 6.89 | 1.37 | -- | 23.94 | 1283 | -- | -- |
| 710.74 | 1.25 | 8.21 | 2.15 | 5.77 | -- | 1.19 | -- | 0.363 | 17.1 | -- | -- | -- | -- |
| 714.27 | 1.25 | 8.2 | 2.15 | 5.77 | -- | -- | -- | 0.369 | 17.1 | -- | -- | -- | -- |
| 1926.84 | 2.04 | 8 | 3.24 | -- | -3.84 | -- | -- | 0.847 | -- | 24 | 1287 | -- | -- |
| 635.28 | 1.17 | 8.24 | -- | 5.59 | -2.04 | -- | -- | 0.176 | 17.2 | 27.29 | 5632 | -- | -- |
| 2462.07 | 2.32 | 8.14 | 1.94 | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
| 836.11 | 1.35 | 8.26 | -- | 5.73 | -- | -- | -- | 0.13 | 17.1 | -- | -- | -- | -- |
| 2180.29 | 2.17 | 8.1 | -- | -- | -3.13 | -- | -- | 0.384 | -- | 24.11 | 1275 | -- | -- |
| 2561.69 | 2.36 | 8.19 | -- | -- | -- | -- | -- | 0.00662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 356.84 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 2 | 358.09 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 13 | 366.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 14 | 370.55 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 16 | 371.13 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 20 | 371.51 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 22 | 371.72 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 28 | 372.91 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 30 | 372.95 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 31 | 372.96 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 35 | 373.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 40 | 373.88 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 42 | 374.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 44 | 374.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 68 | 375.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 20 |
| 70 | 375.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 99 | 376.03 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 129 | 376.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 170 | 377.25 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 187 | 377.51 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 196 | 377.67 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 215 | 378.02 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 216 | 378.06 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 230 | 378.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 232 | 378.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 236 | 378.39 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 254 | 378.59 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 269 | 378.86 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 283 | 378.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 318 | 379.31 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 323 | 379.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 350 | 379.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 414 | 380.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 464 | 380.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 491 | 380.57 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 504 | 380.62 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 580 | 381.10 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 581 | 381.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 589 | 381.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 665 | 381.92 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 669 | 381.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 711 | 382.36 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 726 | 382.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 738 | 382.63 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 769 | 382.97 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 786 | 383.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 820 | 383.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 854 | 383.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |