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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0363900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0228) R2 : 0.00129
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0368 (0.048) R2dN8 : 0.00167 R2N8 : 0.00129
σ : 0.429
deviance : 84.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.73 0.417 2.95 -1.24 0.0997 0.925 -0.235 -6.61 -0.037 10.9 30.2 4376 -- --
82.19 0.425 2.83 -0.0675 0.17 -0.137 -0.225 -- -0.0239 12.7 27.59 5505 -- --
78.96 0.414 2.95 -1.24 0.102 0.925 -- -6.59 -0.0382 10.6 30.2 4376 -- --
82.31 0.425 2.83 -0.0723 0.18 -0.145 -- -- -0.0232 12.9 27 5585 -- --
79.59 0.416 2.96 -1.26 -- 0.929 -- -6.69 -0.0396 -- 30.19 4376 -- --
83.28 0.428 2.83 -0.103 0.0979 -- -0.262 -- -0.0478 11.3 -- -- -- --
83.57 0.428 2.83 -0.114 0.0995 -- -- -- -0.049 11.1 -- -- -- --
83.48 0.426 2.85 -0.191 -- 0.162 -- -- -0.0894 -- 24.1 4623 -- --
82.44 0.425 2.83 -- 0.187 -0.154 -- -- -0.0139 12.9 27 5585 -- --
84.19 0.429 2.84 -0.116 -- -- -- -- -0.0498 -- -- -- -- --
83.91 0.429 2.83 -- 0.101 -- -- -- -0.0362 11.2 -- -- -- --
84.04 0.428 2.83 -- -- -0.0742 -- -- -0.0271 -- 27 5585 -- --
84.54 0.429 2.83 -- -- -- -- -- -0.0368 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.43 radiation 10.0 90 < th dose dependent rect. 10 2
4 74.02 precipitation 0.1 1440 > th dose independent rect. 12 1
6 74.02 precipitation 0.1 1440 > th dose dependent rect. 12 1
11 74.47 wind 1.0 1440 > th dose independent rect. 17 1
12 74.50 wind 1.0 1440 < th dose independent rect. 17 1
13 74.56 radiation 10.0 90 < th dose independent rect. 10 3
14 74.71 wind 1.0 1440 < th dose dependent rect. 17 1
15 74.72 radiation 10.0 90 < th dose independent rect. 11 1
21 75.68 wind 9.0 30 < th dose independent rect. 3 23
22 75.81 temperature 15.0 30 > th dose dependent rect. 2 1
25 75.82 atmosphere 1005.0 30 > th dose dependent rect. 2 1
26 75.83 temperature 20.0 30 > th dose independent rect. 2 1
27 75.83 wind 5.0 30 < th dose dependent rect. 2 1
30 75.83 atmosphere 995.0 30 > th dose dependent rect. 2 1
32 75.84 atmosphere 1005.0 30 > th dose independent rect. 2 1
34 75.85 wind 3.0 30 < th dose independent rect. 2 1
37 75.85 humidity 80.0 30 > th dose independent rect. 2 1
40 75.86 temperature 10.0 30 > th dose independent rect. 2 1
42 75.86 temperature 30.0 30 < th dose independent rect. 2 1
43 75.86 humidity 50.0 30 > th dose independent rect. 2 1
47 75.86 atmosphere 1010.0 30 < th dose independent rect. 2 1
49 75.86 radiation 1.0 30 < th dose independent rect. 2 1
54 75.86 precipitation 0.1 30 < th dose independent rect. 2 1
55 75.86 temperature 10.0 30 > th dose independent rect. 3 23
56 75.86 humidity 50.0 30 > th dose dependent rect. 2 1
59 75.86 radiation 1.0 30 < th dose dependent rect. 2 1
64 75.86 precipitation 0.1 30 < th dose dependent rect. 2 1
69 75.99 atmosphere 1015.0 30 < th dose dependent rect. 2 1
72 76.10 temperature 30.0 30 < th dose dependent rect. 2 1
80 76.27 wind 1.0 30 > th dose independent rect. 2 1
87 76.36 radiation 1.0 4320 < th dose dependent rect. 3 1
89 76.37 wind 9.0 1440 < th dose independent rect. 3 1
90 76.37 temperature 10.0 1440 > th dose independent rect. 3 1
93 76.37 temperature 30.0 1440 < th dose independent rect. 3 1
97 76.37 humidity 50.0 1440 > th dose independent rect. 3 1
106 76.37 atmosphere 995.0 1440 > th dose independent rect. 3 1
107 76.37 radiation 1.0 1440 < th dose independent rect. 3 1
127 76.37 temperature 10.0 1440 > th dose independent rect. 4 23
193 77.20 atmosphere 995.0 30 > th dose independent rect. 3 23
197 77.31 radiation 10.0 90 < th dose independent rect. 10 5
201 77.55 precipitation 0.1 30 < th dose independent rect. 3 23
202 77.55 precipitation 0.1 30 < th dose dependent rect. 3 23
205 77.57 wind 7.0 10 > th dose independent rect. 13 3
207 77.59 wind 7.0 30 > th dose dependent rect. 13 5
209 77.63 radiation 20.0 90 < th dose independent rect. 10 18
221 77.82 wind 7.0 30 > th dose dependent rect. 15 3
233 77.91 temperature 30.0 4320 > th dose independent rect. 16 1
242 77.97 wind 7.0 10 > th dose dependent rect. 15 1
247 78.00 temperature 25.0 4320 > th dose independent rect. 22 3
251 78.02 temperature 25.0 4320 > th dose independent rect. 23 1
252 78.02 radiation 10.0 270 < th dose independent rect. 8 7
276 78.17 temperature 30.0 4320 > th dose independent rect. 12 2
279 78.19 temperature 30.0 4320 < th dose independent rect. 16 1
280 78.19 temperature 30.0 4320 < th dose independent rect. 12 2
320 78.40 temperature 25.0 4320 < th dose independent rect. 22 3
321 78.40 temperature 25.0 4320 < th dose independent rect. 22 5
324 78.40 radiation 20.0 90 < th dose dependent rect. 10 5
330 78.41 atmosphere 1015.0 1440 < th dose independent rect. 3 1
348 78.44 temperature 30.0 4320 > th dose independent rect. 12 5
353 78.45 radiation 20.0 720 < th dose dependent rect. 7 5
379 78.51 radiation 10.0 720 < th dose independent rect. 24 12
404 78.58 radiation 40.0 90 < th dose dependent rect. 10 18
419 78.63 temperature 30.0 4320 < th dose independent rect. 12 6
429 78.66 radiation 40.0 270 < th dose independent rect. 9 18
441 78.68 radiation 20.0 720 < th dose dependent rect. 24 12
445 78.70 temperature 30.0 4320 < th dose independent rect. 12 13
448 78.70 radiation 20.0 270 < th dose independent rect. 22 15
461 78.71 temperature 30.0 4320 < th dose independent rect. 12 17
591 78.93 temperature 30.0 4320 > th dose independent sin 15 NA
633 78.98 temperature 25.0 4320 > th dose dependent rect. 22 2
695 79.04 temperature 30.0 4320 < th dose independent sin 15 NA
724 79.08 wind 9.0 30 < th dose independent sin 14 NA
736 79.09 wind 7.0 10 > th dose independent rect. 13 6
741 79.10 wind 7.0 270 > th dose independent rect. 13 1
753 79.12 radiation 10.0 720 < th dose independent rect. 17 19
793 79.17 temperature 30.0 4320 < th dose independent rect. 16 9
807 79.18 wind 5.0 270 > th dose dependent rect. 13 1
811 79.19 temperature 30.0 4320 < th dose independent rect. 16 4
817 79.19 temperature 30.0 4320 < th dose independent rect. 16 16
893 79.25 wind 9.0 14400 > th dose independent rect. 1 1
908 79.25 wind 9.0 14400 > th dose dependent rect. 1 1
941 79.27 temperature 30.0 4320 > th dose independent rect. 16 23