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Os09g0363900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Similar to HOTHEAD protein precursor (ADHESION OF CALYX EDGES protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
78.73 | 0.417 | 2.95 | -1.24 | 0.0997 | 0.925 | -0.235 | -6.61 | -0.037 | 10.9 | 30.2 | 4376 | -- | -- |
82.19 | 0.425 | 2.83 | -0.0675 | 0.17 | -0.137 | -0.225 | -- | -0.0239 | 12.7 | 27.59 | 5505 | -- | -- |
78.96 | 0.414 | 2.95 | -1.24 | 0.102 | 0.925 | -- | -6.59 | -0.0382 | 10.6 | 30.2 | 4376 | -- | -- |
82.31 | 0.425 | 2.83 | -0.0723 | 0.18 | -0.145 | -- | -- | -0.0232 | 12.9 | 27 | 5585 | -- | -- |
79.59 | 0.416 | 2.96 | -1.26 | -- | 0.929 | -- | -6.69 | -0.0396 | -- | 30.19 | 4376 | -- | -- |
83.28 | 0.428 | 2.83 | -0.103 | 0.0979 | -- | -0.262 | -- | -0.0478 | 11.3 | -- | -- | -- | -- |
83.57 | 0.428 | 2.83 | -0.114 | 0.0995 | -- | -- | -- | -0.049 | 11.1 | -- | -- | -- | -- |
83.48 | 0.426 | 2.85 | -0.191 | -- | 0.162 | -- | -- | -0.0894 | -- | 24.1 | 4623 | -- | -- |
82.44 | 0.425 | 2.83 | -- | 0.187 | -0.154 | -- | -- | -0.0139 | 12.9 | 27 | 5585 | -- | -- |
84.19 | 0.429 | 2.84 | -0.116 | -- | -- | -- | -- | -0.0498 | -- | -- | -- | -- | -- |
83.91 | 0.429 | 2.83 | -- | 0.101 | -- | -- | -- | -0.0362 | 11.2 | -- | -- | -- | -- |
84.04 | 0.428 | 2.83 | -- | -- | -0.0742 | -- | -- | -0.0271 | -- | 27 | 5585 | -- | -- |
84.54 | 0.429 | 2.83 | -- | -- | -- | -- | -- | -0.0368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 72.43 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 2 |
4 | 74.02 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 12 | 1 |
6 | 74.02 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
11 | 74.47 | wind | 1.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
12 | 74.50 | wind | 1.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
13 | 74.56 | radiation | 10.0 | 90 | < th | dose independent | rect. | 10 | 3 |
14 | 74.71 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
15 | 74.72 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 1 |
21 | 75.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
22 | 75.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
25 | 75.82 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
26 | 75.83 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
27 | 75.83 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
30 | 75.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
32 | 75.84 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
34 | 75.85 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
37 | 75.85 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
40 | 75.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
42 | 75.86 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
43 | 75.86 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
47 | 75.86 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
49 | 75.86 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
54 | 75.86 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
55 | 75.86 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
56 | 75.86 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
59 | 75.86 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
64 | 75.86 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
69 | 75.99 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
72 | 76.10 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
80 | 76.27 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
87 | 76.36 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
89 | 76.37 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
90 | 76.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
93 | 76.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
97 | 76.37 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
106 | 76.37 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
107 | 76.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
127 | 76.37 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
193 | 77.20 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
197 | 77.31 | radiation | 10.0 | 90 | < th | dose independent | rect. | 10 | 5 |
201 | 77.55 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
202 | 77.55 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
205 | 77.57 | wind | 7.0 | 10 | > th | dose independent | rect. | 13 | 3 |
207 | 77.59 | wind | 7.0 | 30 | > th | dose dependent | rect. | 13 | 5 |
209 | 77.63 | radiation | 20.0 | 90 | < th | dose independent | rect. | 10 | 18 |
221 | 77.82 | wind | 7.0 | 30 | > th | dose dependent | rect. | 15 | 3 |
233 | 77.91 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 1 |
242 | 77.97 | wind | 7.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
247 | 78.00 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 22 | 3 |
251 | 78.02 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
252 | 78.02 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 7 |
276 | 78.17 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
279 | 78.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
280 | 78.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 2 |
320 | 78.40 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 3 |
321 | 78.40 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 5 |
324 | 78.40 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 10 | 5 |
330 | 78.41 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
348 | 78.44 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
353 | 78.45 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 7 | 5 |
379 | 78.51 | radiation | 10.0 | 720 | < th | dose independent | rect. | 24 | 12 |
404 | 78.58 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 10 | 18 |
419 | 78.63 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 6 |
429 | 78.66 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 18 |
441 | 78.68 | radiation | 20.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
445 | 78.70 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 13 |
448 | 78.70 | radiation | 20.0 | 270 | < th | dose independent | rect. | 22 | 15 |
461 | 78.71 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 17 |
591 | 78.93 | temperature | 30.0 | 4320 | > th | dose independent | sin | 15 | NA |
633 | 78.98 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 2 |
695 | 79.04 | temperature | 30.0 | 4320 | < th | dose independent | sin | 15 | NA |
724 | 79.08 | wind | 9.0 | 30 | < th | dose independent | sin | 14 | NA |
736 | 79.09 | wind | 7.0 | 10 | > th | dose independent | rect. | 13 | 6 |
741 | 79.10 | wind | 7.0 | 270 | > th | dose independent | rect. | 13 | 1 |
753 | 79.12 | radiation | 10.0 | 720 | < th | dose independent | rect. | 17 | 19 |
793 | 79.17 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
807 | 79.18 | wind | 5.0 | 270 | > th | dose dependent | rect. | 13 | 1 |
811 | 79.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
817 | 79.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 16 | 16 |
893 | 79.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
908 | 79.25 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
941 | 79.27 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 16 | 23 |