Os09g0363200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].
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Os09g0363200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to mutator-like transposase [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.14 | 0.376 | 8.02 | -1.31 | 0.5 | 0.894 | 0.0896 | 0.0927 | -0.242 | 12 | 73.38 | 1371 | -- | -- |
| 64.15 | 0.373 | 8.02 | -1.31 | 0.5 | 0.898 | 0.0929 | -- | -0.24 | 12 | 73.24 | 1361 | -- | -- |
| 64.17 | 0.373 | 8.02 | -1.31 | 0.504 | 0.896 | -- | 0.0694 | -0.242 | 12 | 73.35 | 1361 | -- | -- |
| 64.18 | 0.373 | 8.02 | -1.31 | 0.503 | 0.902 | -- | -- | -0.241 | 12 | 73.25 | 1361 | -- | -- |
| 76.6 | 0.408 | 8.04 | -1.3 | -- | 0.819 | -- | 0.0761 | -0.276 | -- | 77.36 | 1557 | -- | -- |
| 83.71 | 0.429 | 8.04 | -1.14 | 0.43 | -- | -0.0752 | -- | -0.327 | 11.6 | -- | -- | -- | -- |
| 83.73 | 0.429 | 8.04 | -1.14 | 0.43 | -- | -- | -- | -0.327 | 11.6 | -- | -- | -- | -- |
| 76.61 | 0.408 | 8.04 | -1.3 | -- | 0.825 | -- | -- | -0.277 | -- | 77.34 | 1558 | -- | -- |
| 84.61 | 0.428 | 8 | -- | 0.456 | 1.25 | -- | -- | -0.217 | 12.2 | 66.59 | 31177 | -- | -- |
| 95.37 | 0.456 | 8.05 | -1.15 | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
| 118.15 | 0.508 | 8.01 | -- | 0.444 | -- | -- | -- | -0.2 | 11.7 | -- | -- | -- | -- |
| 95.53 | 0.455 | 8 | -- | -- | 1.26 | -- | -- | -0.151 | -- | 66 | 30465 | -- | -- |
| 130.54 | 0.533 | 8.02 | -- | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.78 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 2 | 62.85 | humidity | 80 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 22 | 63.57 | humidity | 70 | 1440 | < th | dose dependent | sin | 4 | NA |
| 31 | 63.64 | humidity | 70 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 177 | 64.27 | humidity | 60 | 1440 | < th | dose independent | sin | 3 | NA |
| 183 | 64.29 | humidity | 60 | 1440 | > th | dose independent | sin | 3 | NA |
| 197 | 64.36 | humidity | 60 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 242 | 64.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 243 | 64.47 | humidity | 70 | 1440 | < th | dose dependent | no | NA | NA |
| 311 | 64.49 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 357 | 64.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 12 |
| 362 | 64.57 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 367 | 64.58 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 423 | 64.64 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 510 | 64.82 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 18 |
| 520 | 64.83 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 536 | 64.83 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 581 | 64.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 685 | 64.95 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 919 | 65.24 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 9 |