Os09g0362900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SRA-YDG domain containing protein.
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Os09g0362900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SRA-YDG domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.1 | 0.245 | 10.9 | 0.429 | 0.45 | -0.377 | 0.415 | 1.09 | 0.0847 | 11.2 | 20.2 | 1767 | -- | -- |
| 29.52 | 0.253 | 10.9 | 0.328 | 0.45 | -0.476 | 0.576 | -- | 0.0734 | 10.8 | 18.59 | 4104 | -- | -- |
| 27.8 | 0.246 | 10.9 | 0.442 | 0.451 | -0.387 | -- | 1.07 | 0.0856 | 11.1 | 20.27 | 1705 | -- | -- |
| 28.98 | 0.251 | 10.9 | 0.372 | 0.446 | -0.735 | -- | -- | 0.0633 | 11.1 | 18.42 | 3250 | -- | -- |
| 39.93 | 0.294 | 10.9 | 0.45 | -- | -0.435 | -- | 0.911 | 0.0956 | -- | 20.26 | 2113 | -- | -- |
| 34.84 | 0.277 | 11 | 0.0153 | 0.449 | -- | 0.438 | -- | -0.0712 | 11.1 | -- | -- | -- | -- |
| 35.66 | 0.28 | 11 | 0.0332 | 0.447 | -- | -- | -- | -0.0696 | 11.2 | -- | -- | -- | -- |
| 40.7 | 0.297 | 10.9 | 0.4 | -- | -0.804 | -- | -- | 0.0722 | -- | 18.4 | 3635 | -- | -- |
| 31.48 | 0.261 | 10.9 | -- | 0.452 | -0.547 | -- | -- | -0.015 | 10.9 | 17.9 | 3148 | -- | -- |
| 48.14 | 0.324 | 11 | 0.0225 | -- | -- | -- | -- | -0.0735 | -- | -- | -- | -- | -- |
| 35.69 | 0.279 | 11 | -- | 0.447 | -- | -- | -- | -0.0733 | 11.2 | -- | -- | -- | -- |
| 42.67 | 0.304 | 11 | -- | -- | -0.565 | -- | -- | -0.0165 | -- | 18.2 | 2183 | -- | -- |
| 48.15 | 0.324 | 11 | -- | -- | -- | -- | -- | -0.076 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.10 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 4 | 26.21 | humidity | 70 | 14400 | > th | dose dependent | rect. | 23 | 9 |
| 6 | 26.28 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 20 |
| 12 | 26.37 | temperature | 20 | 30 | > th | dose independent | rect. | 19 | 10 |
| 17 | 26.41 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 126 | 27.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 128 | 27.11 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 139 | 27.16 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 145 | 27.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 148 | 27.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 196 | 27.30 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 202 | 27.31 | humidity | 80 | 14400 | > th | dose dependent | sin | 7 | NA |
| 208 | 27.32 | temperature | 20 | 720 | > th | dose independent | rect. | 9 | 18 |
| 299 | 27.44 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 300 | 27.44 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 316 | 27.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 373 | 27.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 397 | 27.55 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 23 |
| 401 | 27.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 402 | 27.56 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 408 | 27.57 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 461 | 27.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 466 | 27.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 481 | 27.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 496 | 27.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 497 | 27.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 520 | 27.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 541 | 27.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 544 | 27.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 549 | 27.67 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 551 | 27.67 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 565 | 27.68 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 603 | 27.69 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 20 |
| 615 | 27.70 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 22 |
| 648 | 27.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 685 | 27.74 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 707 | 27.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 745 | 27.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 789 | 27.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 796 | 27.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 10 |
| 824 | 27.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 849 | 27.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 941 | 27.89 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 964 | 27.90 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 993 | 27.92 | temperature | 20 | 90 | < th | dose independent | sin | 14 | NA |