Os09g0361700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0203 family protein.
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Os09g0361700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0203 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.78 | 0.409 | 9.14 | 3.04 | 0.496 | -0.974 | 0.509 | 1.11 | 0.775 | 23.8 | 9.809 | 2471 | -- | -- |
| 75.4 | 0.404 | 9.14 | 3.09 | 0.422 | -1.12 | 0.615 | -- | 0.861 | 23.9 | 7.869 | 11051 | -- | -- |
| 76.86 | 0.408 | 9.14 | 3.07 | 0.495 | -0.971 | -- | 1.31 | 0.785 | 23.8 | 9.171 | 2445 | -- | -- |
| 77.02 | 0.409 | 9.15 | 3.06 | 0.427 | -1.11 | -- | -- | 0.855 | 23.9 | 7.5 | 11024 | -- | -- |
| 86.12 | 0.435 | 9.17 | 2.67 | -- | -1.18 | -- | 0.519 | 0.68 | -- | 9.171 | 2445 | -- | -- |
| 95.52 | 0.458 | 9.22 | 2.4 | 0.386 | -- | 0.571 | -- | 0.502 | 23.6 | -- | -- | -- | -- |
| 96.93 | 0.461 | 9.23 | 2.37 | 0.383 | -- | -- | -- | 0.5 | 23.7 | -- | -- | -- | -- |
| 86.35 | 0.435 | 9.18 | 2.6 | -- | -1.17 | -- | -- | 0.661 | -- | 7.5 | 11024 | -- | -- |
| 243.46 | 0.727 | 9.29 | -- | 0.433 | -0.171 | -- | -- | 0.205 | 0.0518 | 31.97 | 1484 | -- | -- |
| 106.17 | 0.481 | 9.22 | 2.38 | -- | -- | -- | -- | 0.504 | -- | -- | -- | -- | -- |
| 245.23 | 0.733 | 9.28 | -- | 0.413 | -- | -- | -- | 0.236 | 0.0772 | -- | -- | -- | -- |
| 180.19 | 0.625 | 9.38 | -- | -- | 1.38 | -- | -- | -0.193 | -- | 14.5 | 47520 | -- | -- |
| 255.99 | 0.747 | 9.28 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.46 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 3 | 69.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 7 | 69.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 8 | 69.79 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 16 | 69.92 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 22 | 70.03 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 37 | 70.16 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 38 | 70.17 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 53 | 70.27 | wind | 5 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 78 | 70.42 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 98 | 70.50 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 103 | 70.52 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 118 | 70.59 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 122 | 70.60 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 138 | 70.64 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 155 | 70.68 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 164 | 70.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 190 | 70.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 220 | 70.95 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 247 | 70.98 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 276 | 71.11 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 320 | 71.24 | wind | 3 | 43200 | > th | dose dependent | sin | 6 | NA |
| 342 | 71.30 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 379 | 71.38 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 399 | 71.45 | wind | 9 | 43200 | < th | dose dependent | sin | 6 | NA |
| 426 | 71.51 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 441 | 71.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 446 | 71.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 448 | 71.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 454 | 71.56 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 464 | 71.57 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 468 | 71.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 469 | 71.58 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 482 | 71.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 491 | 71.60 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 498 | 71.61 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 501 | 71.62 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 17 |
| 509 | 71.65 | radiation | 30 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 511 | 71.65 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 512 | 71.65 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 528 | 71.67 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 538 | 71.69 | humidity | 80 | 14400 | > th | dose dependent | sin | 13 | NA |
| 597 | 71.79 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 627 | 71.85 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 637 | 71.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 650 | 71.89 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 654 | 71.89 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 681 | 71.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 10 |
| 687 | 71.96 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 698 | 71.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 755 | 72.08 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 796 | 72.15 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 814 | 72.18 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 820 | 72.19 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 890 | 72.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 891 | 72.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 946 | 72.40 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 974 | 72.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 991 | 72.45 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 993 | 72.46 | wind | 5 | 43200 | < th | dose independent | sin | 5 | NA |