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Os09g0361100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0164) R2 : 0.721
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.34 (0.0391) R2dC : 0.724 R2C : 0.721
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00685 (0.0344) R2dN8 : 3.14e-05 R2N8 : -0.00279
σ : 0.308
deviance : 43.48
__
_____
C
peak time of C : 23
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.8 0.269 12.1 0.478 1.4 -0.283 -0.5 1.36 0.0344 23.3 29.87 321 -- --
34.89 0.275 12.1 0.521 1.38 -0.313 -0.136 -- 0.026 23.3 39.95 356 -- --
33.63 0.27 12.1 0.472 1.39 -0.261 -- 1.26 0.0369 23.2 29.84 362 -- --
34.97 0.275 12.1 0.518 1.39 -0.317 -- -- 0.0243 23.3 39.98 355 -- --
88.62 0.441 12.1 0.594 -- 0.817 -- 0.199 0.0356 -- 17.44 30 -- --
36.64 0.284 12.1 0.502 1.34 -- -0.127 -- 0.0629 23 -- -- -- --
36.7 0.284 12.1 0.507 1.34 -- -- -- 0.0633 23 -- -- -- --
56.98 0.352 12.1 0.586 -- 0.979 -- -- 0.163 -- 4.849 29 -- --
41.73 0.301 12.1 -- 1.38 -0.319 -- -- 0.00794 23.4 39.28 439 -- --
148.08 0.569 12 0.537 -- -- -- -- 0.0734 -- -- -- -- --
43.48 0.308 12.1 -- 1.34 -- -- -- 0.00685 23 -- -- -- --
62.35 0.368 12 -- -- 0.931 -- -- 0.109 -- 5.26 30 -- --
155.69 0.582 12.1 -- -- -- -- -- 0.0138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.04 humidity 50.0 10 > th dose independent rect. 6 8
2 27.37 humidity 60.0 270 > th dose independent rect. 4 8
3 27.39 humidity 50.0 90 > th dose dependent rect. 6 7
4 27.42 humidity 60.0 90 > th dose independent rect. 6 7
44 28.97 radiation 40.0 270 < th dose independent rect. 5 6
54 29.18 radiation 40.0 10 < th dose independent rect. 14 16
56 29.19 humidity 50.0 10 > th dose independent rect. 6 20
61 29.24 temperature 10.0 10 > th dose independent rect. 6 8
63 29.24 atmosphere 995.0 10 > th dose independent rect. 6 8
64 29.24 atmosphere 1015.0 10 < th dose independent rect. 6 8
65 29.24 precipitation 0.1 10 < th dose independent rect. 6 8
67 29.24 temperature 10.0 10 > th dose independent rect. 14 16
68 29.24 precipitation 0.1 10 < th dose dependent rect. 6 8
69 29.26 wind 1.0 30 > th dose independent rect. 6 8
70 29.30 humidity 60.0 270 > th dose independent rect. 18 17
72 29.32 atmosphere 995.0 10 > th dose independent rect. 14 16
87 29.40 temperature 10.0 10 > th dose dependent rect. 6 8
88 29.41 wind 1.0 270 > th dose independent rect. 4 7
94 29.46 radiation 40.0 270 < th dose independent rect. 17 18
95 29.46 atmosphere 995.0 270 > th dose dependent rect. 11 6
98 29.47 temperature 10.0 1440 > th dose independent rect. 7 8
101 29.47 temperature 10.0 1440 > th dose independent rect. 15 16
106 29.48 wind 9.0 10 < th dose independent rect. 14 16
109 29.51 humidity 50.0 10 > th dose independent rect. 6 18
111 29.54 wind 9.0 10 < th dose independent rect. 6 8
114 29.59 wind 7.0 270 < th dose independent rect. 16 8
118 29.60 radiation 40.0 270 < th dose independent rect. 18 16
120 29.62 precipitation 0.1 30 < th dose independent rect. 14 16
121 29.62 precipitation 0.1 30 < th dose dependent rect. 14 16
123 29.65 radiation 40.0 10 < th dose independent rect. 12 18
132 29.68 humidity 50.0 270 > th dose dependent rect. 23 6
135 29.71 temperature 10.0 270 > th dose dependent rect. 5 6
140 29.73 radiation 1.0 30 > th dose independent rect. 6 8
141 29.73 atmosphere 995.0 270 > th dose independent rect. 24 16
153 29.80 temperature 15.0 270 > th dose independent rect. 24 16
159 29.85 temperature 10.0 270 > th dose independent rect. 16 8
160 29.85 radiation 30.0 270 < th dose independent rect. 16 8
166 29.85 atmosphere 1015.0 270 < th dose independent rect. 24 16
171 29.87 humidity 70.0 30 > th dose dependent rect. 24 6
174 29.88 humidity 80.0 270 > th dose independent rect. 23 6
199 29.93 radiation 1.0 90 > th dose independent rect. 4 10
209 29.93 radiation 40.0 270 < th dose dependent rect. 5 6
211 29.94 wind 9.0 270 < th dose independent rect. 24 16
213 29.94 radiation 1.0 270 < th dose dependent rect. 23 7
219 29.97 temperature 15.0 270 > th dose independent rect. 23 6
222 29.97 wind 9.0 270 < th dose independent rect. 5 18
225 29.98 atmosphere 1015.0 10 < th dose independent rect. 14 16
227 29.99 radiation 1.0 270 < th dose independent rect. 23 6
231 30.00 wind 9.0 270 < th dose independent rect. 23 6
233 30.00 temperature 30.0 270 < th dose independent rect. 23 6
234 30.00 humidity 50.0 270 > th dose independent rect. 23 6
237 30.00 atmosphere 995.0 270 > th dose independent rect. 23 6
243 30.00 temperature 10.0 270 > th dose independent rect. 5 18
259 30.03 precipitation 0.1 270 < th dose independent rect. 16 8
265 30.03 radiation 40.0 270 < th dose independent rect. 5 19
267 30.03 precipitation 0.1 270 < th dose dependent rect. 16 8
268 30.03 radiation 40.0 10 < th dose dependent rect. 14 16
270 30.05 atmosphere 1015.0 270 < th dose independent rect. 23 6
275 30.06 precipitation 0.1 270 < th dose independent rect. 24 16
277 30.06 precipitation 0.1 270 < th dose dependent rect. 24 16
279 30.07 precipitation 0.1 270 < th dose independent rect. 4 7
282 30.07 precipitation 0.1 270 < th dose dependent rect. 4 7
288 30.09 temperature 10.0 270 > th dose independent rect. 4 7
289 30.09 atmosphere 995.0 270 > th dose independent rect. 4 7
290 30.09 atmosphere 1015.0 270 < th dose independent rect. 4 7
293 30.09 temperature 10.0 270 > th dose independent rect. 11 17
295 30.09 radiation 30.0 270 < th dose dependent rect. 6 3
297 30.09 radiation 10.0 270 < th dose dependent rect. 5 19
309 30.11 precipitation 0.1 270 < th dose independent rect. 5 18
310 30.11 precipitation 0.1 270 < th dose dependent rect. 5 18
315 30.12 humidity 50.0 30 > th dose dependent rect. 6 20
318 30.13 temperature 10.0 270 > th dose dependent rect. 23 6
321 30.14 wind 9.0 270 < th dose independent rect. 4 7
322 30.14 atmosphere 1000.0 270 > th dose independent rect. 10 7
341 30.16 precipitation 0.1 270 < th dose independent rect. 23 6
348 30.16 precipitation 0.1 270 < th dose dependent rect. 23 6
364 30.19 atmosphere 995.0 270 > th dose independent rect. 11 18
371 30.20 radiation 1.0 90 > th dose independent sin 5 NA
382 30.21 radiation 40.0 270 < th dose dependent rect. 5 19
392 30.23 temperature 30.0 270 < th dose independent rect. 22 8
393 30.23 humidity 50.0 270 > th dose independent rect. 22 8
396 30.23 atmosphere 995.0 270 > th dose independent rect. 22 8
404 30.23 temperature 10.0 270 > th dose independent rect. 6 16
419 30.24 wind 9.0 270 < th dose independent rect. 22 8
448 30.27 radiation 40.0 270 < th dose dependent rect. 16 8
451 30.28 radiation 1.0 90 < th dose independent sin 4 NA
455 30.28 wind 7.0 270 < th dose independent rect. 17 17
477 30.30 precipitation 0.1 270 < th dose independent rect. 11 17
478 30.30 precipitation 0.1 270 < th dose dependent rect. 11 17
481 30.31 radiation 1.0 270 < th dose dependent sin 8 NA
491 30.32 wind 1.0 270 > th dose independent rect. 17 17
516 30.36 wind 1.0 270 > th dose independent rect. 5 18
533 30.39 humidity 80.0 10 > th dose independent rect. 2 4
537 30.39 wind 9.0 270 < th dose independent rect. 11 17
555 30.40 humidity 50.0 10 > th dose independent rect. 14 16
569 30.41 radiation 1.0 90 < th dose dependent sin 4 NA
577 30.42 radiation 20.0 270 < th dose independent rect. 6 3
578 30.42 precipitation 0.1 270 < th dose independent rect. 22 8
588 30.42 precipitation 0.1 270 < th dose dependent rect. 22 8
594 30.43 humidity 60.0 270 > th dose dependent rect. 1 2
599 30.44 wind 9.0 270 < th dose dependent rect. 23 6
603 30.45 temperature 15.0 270 > th dose independent rect. 10 7
636 30.47 atmosphere 995.0 270 > th dose independent rect. 16 8
658 30.49 humidity 80.0 270 > th dose independent rect. 1 2
659 30.49 humidity 80.0 10 > th dose independent rect. 24 6
663 30.49 radiation 10.0 270 < th dose independent rect. 5 19
697 30.52 precipitation 0.1 270 < th dose independent rect. 17 17
698 30.52 precipitation 0.1 270 < th dose dependent rect. 17 17
712 30.55 radiation 10.0 30 < th dose independent rect. 2 4
714 30.55 wind 1.0 270 > th dose independent rect. 10 7
740 30.57 radiation 40.0 10 < th dose dependent rect. 2 4
758 30.59 atmosphere 1015.0 270 < th dose independent rect. 10 7
764 30.59 temperature 10.0 270 > th dose independent rect. 17 17
770 30.60 wind 9.0 10 < th dose independent rect. 2 4
771 30.60 temperature 10.0 10 > th dose independent rect. 2 4
773 30.60 temperature 30.0 10 < th dose independent rect. 2 4
774 30.60 humidity 50.0 10 > th dose independent rect. 2 4
777 30.60 atmosphere 995.0 10 > th dose independent rect. 2 4
778 30.60 atmosphere 1010.0 10 < th dose independent rect. 2 4
783 30.60 precipitation 0.1 270 < th dose independent rect. 10 7
791 30.60 temperature 10.0 10 > th dose independent rect. 6 20
794 30.60 precipitation 0.1 270 < th dose dependent rect. 10 7
798 30.61 wind 1.0 270 > th dose independent rect. 16 8
820 30.62 radiation 40.0 270 < th dose dependent rect. 17 17
832 30.64 precipitation 0.1 10 < th dose independent rect. 6 20
835 30.64 precipitation 0.1 10 < th dose dependent rect. 6 20
871 30.66 atmosphere 1015.0 270 < th dose dependent rect. 24 5
883 30.67 temperature 10.0 10 > th dose dependent rect. 2 4
888 30.68 atmosphere 995.0 1440 > th dose independent rect. 7 7
900 30.69 wind 9.0 270 < th dose independent rect. 10 7
902 30.69 atmosphere 995.0 270 > th dose independent rect. 18 16
904 30.69 humidity 70.0 30 > th dose independent rect. 6 20
911 30.70 wind 9.0 1440 < th dose independent rect. 3 4
912 30.70 temperature 10.0 1440 > th dose independent rect. 3 4
915 30.70 temperature 30.0 1440 < th dose independent rect. 3 4
919 30.70 humidity 50.0 1440 > th dose independent rect. 3 4
924 30.70 atmosphere 995.0 1440 > th dose independent rect. 3 4
925 30.70 radiation 40.0 1440 < th dose independent rect. 3 4
935 30.70 atmosphere 1015.0 270 < th dose independent rect. 5 18
936 30.70 temperature 10.0 1440 > th dose independent rect. 7 20
939 30.70 wind 9.0 270 < th dose independent rect. 3 22
948 30.71 wind 9.0 30 < th dose independent rect. 6 20
995 30.74 temperature 10.0 270 > th dose independent rect. 1 2
997 30.74 temperature 30.0 270 < th dose independent rect. 1 2
998 30.74 humidity 50.0 270 > th dose independent rect. 1 2