Os09g0357400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os09g0357400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.05 | 0.879 | 7.34 | 5.51 | 1.42 | -1.21 | -1.16 | 5.78 | 2.48 | 3.39 | 1.303 | 1208 | -- | -- |
| 388.62 | 0.918 | 7.19 | 5.73 | 1.41 | -0.92 | -1.24 | -- | 2.51 | 3.44 | 2.5 | 2375 | -- | -- |
| 353.88 | 0.876 | 7.33 | 5.57 | 1.41 | -1.34 | -- | 6.3 | 2.51 | 3.35 | 1.409 | 1247 | -- | -- |
| 391.74 | 0.922 | 7.18 | 5.71 | 1.31 | -0.973 | -- | -- | 2.58 | 3.5 | 2.5 | 3217 | -- | -- |
| 461.86 | 1 | 7.32 | 5.62 | -- | -1.49 | -- | 6.46 | 2.56 | -- | 1.5 | 1377 | -- | -- |
| 395.48 | 0.932 | 7.24 | 5.9 | 1.4 | -- | -1.18 | -- | 2.31 | 3.79 | -- | -- | -- | -- |
| 399.51 | 0.936 | 7.24 | 5.92 | 1.39 | -- | -- | -- | 2.32 | 3.67 | -- | -- | -- | -- |
| 455.92 | 0.994 | 7.24 | 5.86 | -- | -0.949 | -- | -- | 2.42 | -- | 2.388 | 144 | -- | -- |
| 627.62 | 1.17 | 7.6 | -- | 1.35 | -4.41 | -- | -- | 0.719 | 3.81 | 6.85 | 47520 | -- | -- |
| 506.63 | 1.05 | 7.24 | 5.98 | -- | -- | -- | -- | 2.35 | -- | -- | -- | -- | -- |
| 1323.63 | 1.7 | 7.39 | -- | 1.51 | -- | -- | -- | 1.66 | 3.64 | -- | -- | -- | -- |
| 728.48 | 1.26 | 7.61 | -- | -- | -4.49 | -- | -- | 0.733 | -- | 6.838 | 47520 | -- | -- |
| 1449.75 | 1.78 | 7.39 | -- | -- | -- | -- | -- | 1.69 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.54 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 2 | 333.51 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 4 | 337.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 7 | 337.54 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 12 | 338.98 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 26 | 340.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 75 | 342.74 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 91 | 343.35 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 96 | 343.47 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 15 | 16 |
| 97 | 343.50 | wind | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 106 | 343.75 | wind | 1.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 112 | 343.93 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 150 | 344.67 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 195 | 345.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 17 |
| 207 | 345.91 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 15 |
| 211 | 345.94 | wind | 1.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 236 | 346.36 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 256 | 346.62 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 276 | 346.80 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 352 | 347.60 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 356 | 347.65 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 365 | 347.72 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 392 | 347.88 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 431 | 348.18 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 18 |
| 460 | 348.31 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 487 | 348.48 | wind | 7.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 520 | 348.68 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 542 | 348.84 | wind | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 638 | 349.35 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 643 | 349.37 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 697 | 349.66 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 721 | 349.83 | wind | 7.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 742 | 349.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 746 | 349.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 20 |
| 788 | 350.18 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 847 | 350.41 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 921 | 350.70 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 931 | 350.75 | wind | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 942 | 350.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 990 | 351.05 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 994 | 351.06 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 996 | 351.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 4 |