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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0356300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.0572) R2 : 0.292
β1 : -2.97 (0.322) R2dD : 1.88 R2D : -2.74
β2 : -- (--) R2dC : -- R2C : --
β3 : 120 (12) R2dE : 221 R2E : -211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -694 (71.4) R2dD*E : 212 R2D*E : -221
γ1 : 0.13 (0.0508) R2dN8 : 0.0136 R2N8 : -0.911
σ : 0.447
deviance : 91.1
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 11
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5
open length of G : 1.27

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.68 0.444 3.81 -2.97 0.0897 120 -0.0426 -694 0.132 18.9 1000 10 5 1
109.56 0.491 3.3 0.0428 0.0897 3.02 -0.0367 -- 0.132 18.9 1000 10 5 1
90.68 0.447 3.81 -2.97 0.0899 120 -- -694 0.132 18.8 1000 10 5 1
109.56 0.491 3.3 0.0436 0.0899 3.02 -- -- 0.132 18.8 1000 10 5 1
91.1 0.447 3.8 -2.97 -- 120 -- -694 0.13 -- 1000 11 5 1.27
127.35 0.529 3.3 0.0683 0.0373 -- -0.215 -- 0.117 20.2 -- -- -- --
127.5 0.529 3.3 0.0747 0.0377 -- -- -- 0.117 20.1 -- -- -- --
109.98 0.491 3.3 0.042 -- 2.98 -- -- 0.13 -- 1000 10 5 1
109.61 0.49 3.3 -- 0.0895 3.02 -- -- 0.127 18.8 1000 13 5.18 1.2
127.57 0.528 3.3 0.0743 -- -- -- -- 0.117 -- -- -- -- --
127.64 0.528 3.3 -- 0.0373 -- -- -- 0.109 20.2 -- -- -- --
110.03 0.49 3.3 -- -- 2.98 -- -- 0.125 -- 1000 10 5 1
127.72 0.527 3.3 -- -- -- -- -- 0.108 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.68 atmosphere 1000 10 < th dose independent rect. 5 1
8 90.68 atmosphere 1000 10 < th dose dependent rect. 5 1
77 110.78 atmosphere 1000 10 < th dose independent rect. 2 5
101 112.29 wind 1 90 < th dose dependent rect. 5 1
202 117.61 wind 1 90 < th dose independent rect. 5 1
227 118.53 humidity 90 43200 > th dose dependent rect. 21 1
250 119.21 humidity 90 43200 > th dose independent rect. 20 3
263 119.38 wind 3 43200 < th dose independent rect. 11 2
265 119.39 humidity 90 43200 < th dose independent rect. 20 1
273 119.44 wind 5 43200 < th dose dependent rect. 12 1
278 119.47 wind 3 43200 > th dose independent rect. 12 1
283 119.48 wind 5 43200 < th dose dependent rect. 11 3
296 119.56 wind 3 43200 > th dose independent rect. 11 3
299 119.59 wind 1 270 < th dose dependent rect. 3 1
302 119.60 wind 1 43200 > th dose dependent rect. 12 2
314 119.69 humidity 90 43200 > th dose dependent rect. 2 22
325 119.74 humidity 90 43200 > th dose dependent rect. 7 20
326 119.74 humidity 90 43200 > th dose dependent rect. 5 22
335 119.76 humidity 90 43200 > th dose dependent rect. 8 18
340 119.77 humidity 90 43200 > th dose dependent rect. 19 18
371 119.81 humidity 90 43200 > th dose dependent sin 17 NA
394 119.83 humidity 80 43200 < th dose independent rect. 13 1
395 119.83 humidity 90 43200 > th dose dependent no NA NA
420 119.87 humidity 90 43200 > th dose dependent rect. 9 23
465 119.93 humidity 90 43200 > th dose dependent rect. 3 8
472 119.94 humidity 90 43200 > th dose dependent sin 4 NA
475 119.94 humidity 90 43200 > th dose dependent rect. 2 11
482 119.95 wind 1 43200 > th dose dependent rect. 11 4
492 119.96 humidity 90 43200 > th dose dependent rect. 4 6
509 119.99 humidity 90 43200 < th dose independent rect. 9 17
525 120.01 humidity 90 43200 > th dose independent rect. 9 17
556 120.04 radiation 1 43200 > th dose independent rect. 5 4
563 120.04 radiation 1 43200 < th dose dependent rect. 18 13
568 120.05 radiation 1 43200 < th dose independent rect. 5 3
582 120.06 radiation 1 43200 < th dose independent rect. 17 16
584 120.06 humidity 90 43200 > th dose independent rect. 5 22
605 120.08 humidity 90 43200 < th dose independent sin 18 NA
620 120.09 radiation 1 43200 < th dose dependent rect. 18 1
624 120.09 radiation 1 43200 < th dose dependent rect. 18 4
638 120.10 radiation 1 43200 > th dose independent rect. 17 16
655 120.11 radiation 1 43200 < th dose independent rect. 17 21
717 120.13 humidity 90 43200 > th dose independent rect. 2 22
721 120.13 wind 5 43200 > th dose dependent rect. 16 1
722 120.13 radiation 1 43200 < th dose dependent rect. 5 2
730 120.14 humidity 90 43200 > th dose independent sin 18 NA
731 120.14 humidity 80 43200 > th dose independent rect. 12 3
738 120.14 humidity 90 43200 > th dose independent rect. 16 21
740 120.14 radiation 1 43200 > th dose independent rect. 17 21
752 120.15 humidity 80 43200 > th dose independent rect. 13 1
753 120.15 radiation 1 43200 < th dose independent rect. 17 1
769 120.15 humidity 90 43200 > th dose independent rect. 18 19
807 120.17 radiation 1 43200 < th dose independent sin 10 NA
832 120.18 humidity 80 43200 < th dose independent rect. 11 7
838 120.18 radiation 1 43200 < th dose independent rect. 12 21
842 120.18 radiation 1 43200 < th dose dependent sin 12 NA
845 120.18 radiation 1 43200 < th dose dependent rect. 21 10
849 120.19 radiation 1 43200 > th dose independent sin 9 NA
895 120.20 radiation 1 43200 < th dose dependent rect. 17 21
927 120.21 radiation 1 43200 > th dose independent rect. 12 21
933 120.21 humidity 70 43200 > th dose dependent rect. 13 1
946 120.22 humidity 80 43200 > th dose independent rect. 11 7
975 120.22 radiation 1 43200 < th dose dependent rect. 12 19