Os09g0356100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0356100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.2 | 0.262 | 10 | -0.194 | 0.759 | 0.421 | -0.491 | 2.87 | -0.191 | 20 | 24.11 | 37 | -- | -- |
| 34.68 | 0.274 | 10.1 | -0.589 | 0.695 | 0.741 | -0.638 | -- | -0.287 | 20.4 | 25.08 | 108 | -- | -- |
| 31.89 | 0.263 | 10 | -0.163 | 0.765 | 0.401 | -- | 2.89 | -0.188 | 20 | 23.86 | 34 | -- | -- |
| 35.67 | 0.278 | 10.1 | -0.566 | 0.728 | 0.693 | -- | -- | -0.274 | 20.2 | 25.45 | 70 | -- | -- |
| 55.44 | 0.347 | 10 | -0.372 | -- | 0.692 | -- | 1.78 | -0.226 | -- | 24.2 | 329 | -- | -- |
| 43.16 | 0.308 | 10.1 | -0.449 | 0.864 | -- | -0.227 | -- | -0.226 | 19.1 | -- | -- | -- | -- |
| 43.29 | 0.308 | 10.1 | -0.444 | 0.864 | -- | -- | -- | -0.227 | 19.1 | -- | -- | -- | -- |
| 54.98 | 0.345 | 10.1 | -0.627 | -- | 0.976 | -- | -- | -0.34 | -- | 24.31 | 389 | -- | -- |
| 43.14 | 0.306 | 10.1 | -- | 0.774 | 0.59 | -- | -- | -0.177 | 19.8 | 26.63 | 57 | -- | -- |
| 82.66 | 0.425 | 10.1 | -0.461 | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
| 48.49 | 0.326 | 10.1 | -- | 0.869 | -- | -- | -- | -0.177 | 19 | -- | -- | -- | -- |
| 64.99 | 0.375 | 10.1 | -- | -- | 0.886 | -- | -- | -0.255 | -- | 24.5 | 363 | -- | -- |
| 88.27 | 0.439 | 10 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 2 | 29.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 8 | 29.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 16 | 30.05 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 32 | 30.29 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 18 |
| 145 | 31.08 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 264 | 31.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 277 | 31.38 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 282 | 31.39 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 309 | 31.42 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 317 | 31.44 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 323 | 31.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 326 | 31.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 327 | 31.44 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 371 | 31.48 | temperature | 25 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 415 | 31.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 500 | 31.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 556 | 31.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 607 | 31.78 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 677 | 31.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 742 | 32.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 789 | 32.14 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 941 | 32.51 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |