Os09g0355400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os09g0355400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 172.7 | 0.617 | 8.96 | 0.535 | 1.58 | 2.97 | -0.105 | 4.3 | -0.00144 | 7.26 | 1.011 | 7228 | -- | -- |
| 177.29 | 0.62 | 9.07 | -0.182 | 1.58 | 2.67 | 0.256 | -- | -0.264 | 6.76 | 1.51 | 7306 | -- | -- |
| 167.66 | 0.603 | 8.97 | 0.603 | 1.57 | 2.96 | -- | 4.28 | -0.0416 | 7.19 | 1.18 | 7242 | -- | -- |
| 177 | 0.62 | 9.07 | -0.174 | 1.59 | 2.64 | -- | -- | -0.256 | 6.75 | 1.509 | 7305 | -- | -- |
| 298.57 | 0.805 | 8.97 | 0.619 | -- | 2.98 | -- | 4.29 | 0.0163 | -- | 1.17 | 7257 | -- | -- |
| 284.67 | 0.791 | 8.91 | 0.244 | 1.63 | -- | 0.0106 | -- | 0.402 | 7.2 | -- | -- | -- | -- |
| 284.68 | 0.79 | 8.91 | 0.244 | 1.63 | -- | -- | -- | 0.402 | 7.2 | -- | -- | -- | -- |
| 308.44 | 0.818 | 9.08 | -0.115 | -- | 2.58 | -- | -- | -0.19 | -- | 1.522 | 7265 | -- | -- |
| 177.7 | 0.621 | 9.07 | -- | 1.58 | 2.56 | -- | -- | -0.229 | 6.77 | 1.506 | 7306 | -- | -- |
| 424.9 | 0.963 | 8.94 | 0.273 | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
| 286.24 | 0.791 | 8.91 | -- | 1.63 | -- | -- | -- | 0.375 | 7.19 | -- | -- | -- | -- |
| 308.77 | 0.818 | 9.07 | -- | -- | 2.55 | -- | -- | -0.191 | -- | 1.64 | 7271 | -- | -- |
| 426.87 | 0.964 | 8.95 | -- | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 160.69 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 162.21 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 163.24 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 13 | 163.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 26 | 164.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 10 |
| 32 | 164.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 22 |
| 34 | 164.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 40 | 165.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 41 | 165.21 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 45 | 165.29 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 64 | 165.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 22 |
| 66 | 166.03 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 69 | 166.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 75 | 166.39 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 78 | 166.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 102 | 167.06 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 108 | 167.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 118 | 167.31 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 15 |
| 134 | 167.54 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 145 | 167.68 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 157 | 167.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 161 | 167.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 169 | 168.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 175 | 168.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 177 | 168.25 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 180 | 168.26 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 190 | 168.46 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 201 | 168.63 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 17 | 10 |
| 202 | 168.66 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 209 | 168.72 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 215 | 168.81 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 2 | NA |
| 231 | 168.97 | humidity | 80.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 304 | 169.65 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 319 | 169.79 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 332 | 169.95 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 347 | 170.07 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 10 | 21 |
| 371 | 170.25 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 375 | 170.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 19 |
| 395 | 170.43 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 425 | 170.62 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 454 | 170.78 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 475 | 170.98 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 516 | 171.19 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 519 | 171.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 527 | 171.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 21 |
| 600 | 171.60 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 613 | 171.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 632 | 171.79 | humidity | 90.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 645 | 171.87 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 690 | 172.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 701 | 172.16 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 721 | 172.25 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 725 | 172.27 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 739 | 172.33 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 759 | 172.39 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 22 |
| 765 | 172.41 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 10 | 18 |
| 773 | 172.45 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 11 | 16 |
| 824 | 172.63 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 836 | 172.71 | radiation | 1.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 867 | 172.83 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 908 | 172.94 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 941 | 173.02 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 944 | 173.02 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 23 |