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Os09g0354300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.18 (0.0473) R2 : 0.767
β1 : 2.4 (0.176) R2dD : 0.104 R2D : 0.135
β2 : 2.85 (0.131) R2dC : 0.326 R2C : -0.0866
β3 : -6.33 (0.23) R2dE : 0.56 R2E : 0.278
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.104) R2dN8 : 0.076 R2N8 : 0.111
σ : 0.874
deviance : 351.88
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C
peak time of C : 1.85
E
wheather : radiation
threshold : 0.37
memory length : 4455
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.04
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
354.97 0.885 8.22 1.98 2.38 -5.65 -0.259 2.61 0.968 1.6 0.4965 4439 7.26 --
355.94 0.879 8.17 2.5 2.6 -6.06 0.86 -- 1.1 1.64 0.48 4441 6.6 --
349.81 0.871 8.22 1.96 2.79 -5.83 -- 2.99 0.96 1.85 0.4811 4457 6.19 --
351.88 0.874 8.18 2.4 2.85 -6.33 -- -- 1.04 1.85 0.37 4455 6.04 --
435.81 0.972 8.2 2.14 -- -5.07 -- 1.21 1.06 -- 0.3709 7161 6.12 --
915.51 1.42 7.97 3.53 1.13 -- 1.13 -- 1.89 3.45 -- -- -- --
919.4 1.42 7.97 3.51 1.13 -- -- -- 1.89 3.3 -- -- -- --
411.73 0.945 8.15 2.24 -- -5.06 -- -- 1.13 -- 0.36 11465 6.41 --
497.31 1.04 8.26 -- 3.04 -7.01 -- -- 0.727 1.79 0.3377 4455 6.22 --
992.02 1.47 7.97 3.55 -- -- -- -- 1.92 -- -- -- -- --
1243.48 1.65 8.06 -- 1.2 -- -- -- 1.5 3.29 -- -- -- --
458.17 0.997 8.32 -- -- -5.95 -- -- 0.348 -- 0.15 17211 6.62 --
1325.33 1.7 8.06 -- -- -- -- -- 1.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 291.52 wind 5 43200 > th dose independent rect. 13 3
2 292.42 wind 5 43200 < th dose independent rect. 13 3
3 292.53 radiation 40 43200 < th dose dependent rect. 22 7
9 294.40 wind 5 43200 > th dose independent rect. 14 1
16 295.56 radiation 10 14400 < th dose dependent rect. 24 5
31 298.79 wind 3 43200 > th dose dependent rect. 13 3
60 303.86 wind 9 43200 < th dose dependent rect. 13 2
64 303.94 radiation 10 14400 < th dose dependent rect. 2 3
112 309.97 radiation 1 43200 < th dose independent rect. 18 11
124 311.05 radiation 1 43200 < th dose independent rect. 18 1
129 311.18 radiation 1 43200 < th dose independent rect. 18 7
142 311.94 wind 9 43200 < th dose dependent rect. 11 5
218 322.90 radiation 1 43200 < th dose dependent rect. 9 1
221 323.11 radiation 10 43200 < th dose independent rect. 22 8
223 323.13 radiation 10 43200 < th dose independent rect. 20 10
231 323.53 radiation 10 43200 < th dose independent rect. 2 4
234 323.70 radiation 10 43200 < th dose independent rect. 4 2
244 324.46 atmosphere 1005 43200 < th dose independent rect. 8 9
264 325.58 atmosphere 1005 43200 > th dose independent rect. 8 9
268 325.88 radiation 1 43200 > th dose independent rect. 7 3
269 325.91 radiation 1 43200 < th dose independent rect. 7 3
277 326.35 atmosphere 1005 43200 < th dose independent rect. 8 14
279 326.43 atmosphere 1005 43200 < th dose independent rect. 11 2
282 326.52 atmosphere 1005 43200 > th dose independent rect. 11 2
297 326.88 atmosphere 1005 43200 < th dose independent sin 23 NA
310 327.14 atmosphere 1005 43200 > th dose independent rect. 10 4
350 327.94 wind 5 43200 < th dose independent sin 20 NA
362 328.15 atmosphere 1005 43200 > th dose independent sin 0 NA
368 328.27 radiation 1 43200 > th dose independent rect. 7 7
369 328.27 radiation 1 43200 < th dose independent rect. 7 7
427 329.06 radiation 1 43200 < th dose dependent rect. 7 7
447 329.30 atmosphere 1005 43200 < th dose independent rect. 16 1
536 330.37 radiation 20 14400 > th dose dependent rect. 17 14
569 330.78 atmosphere 1005 43200 > th dose independent rect. 16 1
572 330.80 wind 5 43200 > th dose independent sin 20 NA
666 331.63 radiation 20 43200 < th dose independent rect. 17 14
676 331.76 wind 9 43200 < th dose dependent rect. 11 10
678 331.78 atmosphere 1005 43200 < th dose independent no NA NA
687 331.88 atmosphere 1005 43200 < th dose independent rect. 16 7
701 332.01 atmosphere 1015 43200 < th dose dependent rect. 4 1
705 332.04 atmosphere 1005 43200 < th dose independent rect. 11 23
721 332.20 radiation 1 14400 < th dose dependent rect. 18 20
724 332.25 atmosphere 1005 43200 < th dose independent rect. 15 23
736 332.36 radiation 1 14400 < th dose dependent rect. 18 1
755 332.54 atmosphere 1015 43200 < th dose dependent rect. 2 4
791 332.78 atmosphere 1005 43200 > th dose independent no NA NA
805 332.88 atmosphere 1005 43200 > th dose independent rect. 15 23
858 333.27 atmosphere 1005 43200 > th dose independent rect. 11 23
867 333.33 radiation 1 14400 < th dose dependent rect. 18 13
897 333.54 atmosphere 1000 43200 > th dose dependent rect. 17 2
916 333.70 atmosphere 995 43200 > th dose dependent rect. 4 1
972 334.09 atmosphere 1015 43200 < th dose dependent sin 7 NA
973 334.09 atmosphere 995 43200 > th dose dependent rect. 2 1