Os09g0354100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0354100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.38 | 0.252 | -654 | 4020 | 0.136 | -124000 | 0.0217 | 761000 | -0.0908 | 9.14 | 995 | 272 | -- | -- |
| 33.16 | 0.27 | 3.18 | 0.0978 | 0.118 | 0.419 | -0.0302 | -- | -0.0948 | 9.26 | 995 | 272 | -- | -- |
| 29.42 | 0.253 | -658 | 4040 | 0.139 | -124000 | -- | 761000 | -0.0877 | 9.03 | 995 | 271 | -- | -- |
| 28.96 | 0.251 | 3.17 | 0.101 | 0.131 | 1.45 | -- | -- | -0.089 | 8.8 | 995 | 325 | -- | -- |
| 30.53 | 0.257 | -657 | 4040 | -- | -124000 | -- | 761000 | -0.0882 | -- | 995 | 271 | -- | -- |
| 33.36 | 0.271 | 3.18 | 0.101 | 0.115 | -- | -0.0285 | -- | -0.096 | 9.43 | -- | -- | -- | -- |
| 33.36 | 0.27 | 3.18 | 0.1 | 0.115 | -- | -- | -- | -0.096 | 9.51 | -- | -- | -- | -- |
| 30.1 | 0.256 | 3.18 | 0.0805 | -- | 1.38 | -- | -- | -0.085 | -- | 995 | 318 | -- | -- |
| 29.1 | 0.251 | 3.18 | -- | 0.132 | 1.46 | -- | -- | -0.0988 | 8.92 | 995 | 325 | -- | -- |
| 34.15 | 0.273 | 3.18 | 0.0994 | -- | -- | -- | -- | -0.0957 | -- | -- | -- | -- | -- |
| 33.63 | 0.271 | 3.18 | -- | 0.115 | -- | -- | -- | -0.107 | 9.45 | -- | -- | -- | -- |
| 30.27 | 0.256 | 3.18 | -- | -- | 1.39 | -- | -- | -0.096 | -- | 995 | 318 | -- | -- |
| 34.41 | 0.274 | 3.18 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.13 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 2 |
| 2 | 27.14 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 2 |
| 5 | 27.23 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 8 | 27.24 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 18 | 1 |
| 35 | 28.30 | humidity | 70 | 90 | < th | dose independent | rect. | 18 | 1 |
| 39 | 28.49 | atmosphere | 995 | 270 | > th | dose independent | sin | 10 | NA |
| 91 | 29.40 | radiation | 10 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 104 | 29.41 | temperature | 30 | 270 | > th | dose dependent | rect. | 17 | 1 |
| 126 | 29.47 | atmosphere | 995 | 270 | < th | dose independent | sin | 10 | NA |
| 169 | 29.54 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 1 |
| 182 | 29.55 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 197 | 29.63 | atmosphere | 995 | 270 | < th | dose dependent | sin | 9 | NA |
| 250 | 29.76 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 2 |
| 265 | 29.77 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 317 | 29.87 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 435 | 29.97 | atmosphere | 995 | 270 | > th | dose independent | rect. | 8 | 23 |
| 442 | 30.00 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 460 | 30.05 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 471 | 30.10 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 478 | 30.12 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 22 |
| 492 | 30.15 | atmosphere | 995 | 270 | < th | dose dependent | no | NA | NA |
| 694 | 30.19 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 697 | 30.19 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 10 |
| 704 | 30.22 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 716 | 30.24 | temperature | 30 | 270 | > th | dose dependent | sin | 11 | NA |
| 726 | 30.26 | atmosphere | 995 | 270 | < th | dose independent | no | NA | NA |
| 934 | 30.27 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 948 | 30.28 | atmosphere | 995 | 270 | > th | dose independent | rect. | 20 | 23 |
| 963 | 30.30 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 15 |
| 969 | 30.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 976 | 30.33 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 16 |