Os09g0353400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os09g0353400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.61 | 0.756 | 3 | -0.0284 | 0.109 | 1.13 | 0.0788 | -0.0498 | 0.179 | 9.49 | 1015 | 981 | -- | -- |
| 258.58 | 0.749 | 3 | -0.0276 | 0.108 | 1.17 | 0.0893 | -- | 0.179 | 9.35 | 1015 | 986 | -- | -- |
| 258.6 | 0.749 | 3 | -0.023 | 0.106 | 1.17 | -- | 0.015 | 0.179 | 9.94 | 1015 | 983 | -- | -- |
| 258.6 | 0.749 | 3 | -0.0247 | 0.107 | 1.16 | -- | -- | 0.179 | 9.86 | 1015 | 986 | -- | -- |
| 259.29 | 0.75 | 3 | -0.0263 | -- | 1.19 | -- | 0.0136 | 0.18 | -- | 1015 | 1000 | -- | -- |
| 264.79 | 0.763 | 3.01 | -0.0709 | 0.117 | -- | -0.0925 | -- | 0.154 | 10.6 | -- | -- | -- | -- |
| 264.81 | 0.762 | 3.01 | -0.0752 | 0.12 | -- | -- | -- | 0.153 | 10.1 | -- | -- | -- | -- |
| 259.29 | 0.75 | 3 | -0.026 | -- | 1.18 | -- | -- | 0.18 | -- | 1015 | 1000 | -- | -- |
| 258.62 | 0.749 | 3 | -- | 0.108 | 1.17 | -- | -- | 0.182 | 9.88 | 1015 | 986 | -- | -- |
| 265.68 | 0.762 | 3.01 | -0.0768 | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
| 264.96 | 0.761 | 3 | -- | 0.12 | -- | -- | -- | 0.161 | 10.2 | -- | -- | -- | -- |
| 259.3 | 0.75 | 3 | -- | -- | 1.19 | -- | -- | 0.183 | -- | 1015 | 998 | -- | -- |
| 265.83 | 0.761 | 3.01 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.41 | humidity | 60 | 10 | < th | dose independent | rect. | 16 | 18 |
| 2 | 244.50 | humidity | 60 | 10 | < th | dose dependent | rect. | 14 | 21 |
| 5 | 244.64 | humidity | 60 | 90 | < th | dose independent | rect. | 15 | 19 |
| 6 | 244.69 | humidity | 60 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 8 | 245.05 | humidity | 60 | 30 | < th | dose independent | sin | 11 | NA |
| 12 | 245.34 | humidity | 60 | 30 | > th | dose independent | sin | 11 | NA |
| 13 | 245.35 | humidity | 60 | 10 | < th | dose dependent | sin | 11 | NA |
| 20 | 245.66 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 16 |
| 26 | 245.72 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 27 | 245.74 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 35 | 245.87 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 16 |
| 36 | 245.87 | humidity | 60 | 10 | < th | dose independent | rect. | 18 | 17 |
| 42 | 245.94 | humidity | 60 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 55 | 245.95 | radiation | 30 | 30 | > th | dose dependent | rect. | 15 | 19 |
| 61 | 246.00 | humidity | 60 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 71 | 246.00 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 10 |
| 94 | 246.04 | humidity | 60 | 10 | < th | dose independent | rect. | 9 | 1 |
| 97 | 246.04 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 3 |
| 156 | 246.07 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 161 | 246.07 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 271 | 246.20 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 421 | 246.54 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 489 | 246.83 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 10 |
| 494 | 246.84 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 8 |
| 498 | 246.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 539 | 247.07 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 16 |
| 572 | 247.59 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 1 |
| 576 | 247.67 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 676 | 248.46 | humidity | 90 | 90 | > th | dose dependent | rect. | 11 | 8 |
| 702 | 248.59 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 762 | 249.00 | humidity | 90 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 763 | 249.00 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 6 |
| 778 | 249.30 | humidity | 90 | 90 | > th | dose independent | rect. | 16 | 1 |
| 824 | 249.53 | radiation | 40 | 10 | > th | dose independent | sin | 11 | NA |
| 853 | 249.62 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 3 |
| 912 | 249.77 | temperature | 20 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 947 | 249.95 | wind | 5 | 10 | < th | dose independent | rect. | 15 | 4 |