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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0352000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0537) R2 : 0.491
β1 : 1.31 (0.196) R2dD : 0.0524 R2D : 0.0551
β2 : 3.93 (0.251) R2dC : 0.935 R2C : -0.927
β3 : 7.45 (0.405) R2dE : 1.3 R2E : -0.519
β4 : 5.47 (0.911) R2dD*C : 0.0972 R2D*C : -0.0304
β5 : 5.81 (1.45) R2dD*E : 0.0439 R2D*E : -0.0277
γ1 : 0.222 (0.114) R2dN8 : 0.0057 R2N8 : -0.00577
σ : 1
deviance : 456.82
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_____
C
peak time of C : 19.8
E
wheather : humidity
threshold : 42.59
memory length : 894
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.9
open length of G : 14

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
456.82 1 4.11 1.31 3.93 7.45 5.47 5.81 0.222 19.8 42.59 894 14.9 14
477.22 1.02 4.14 1.41 4.08 7.46 3.43 -- 0.2 20 43.9 837 15 14.8
492.67 1.03 4.14 1.25 4.55 8.09 -- -1.09 0.219 19.6 38.34 853 15.1 14.3
493.92 1.04 4.13 1.29 4.6 8.19 -- -- 0.221 19.5 38.13 853 15.1 14.3
569.89 1.11 3.95 0.912 -- 5.88 -- 0.0839 0.459 -- 56.11 1584 18.8 12.8
661.87 1.21 4.01 1.42 1.69 -- 1.36 -- 0.236 1.89 -- -- -- --
668.52 1.21 4.01 1.38 1.7 -- -- -- 0.227 2.11 -- -- -- --
537.07 1.08 4.08 0.998 -- 3.9 -- -- 0.18 -- 49.42 1690 16.7 12.7
535.86 1.08 4.17 -- 4.88 8.63 -- -- 0.0787 19.4 34.92 878 15.1 13.8
841.58 1.36 3.99 1.45 -- -- -- -- 0.267 -- -- -- -- --
718.74 1.25 4.04 -- 1.73 -- -- -- 0.073 2.13 -- -- -- --
554.97 1.1 3.99 -- -- 4.45 -- -- 0.297 -- 54.91 1692 16.3 13.3
897.15 1.4 4.03 -- -- -- -- -- 0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 463.75 humidity 60 720 > th dose dependent sin 14 NA
10 471.62 humidity 60 720 > th dose dependent rect. 15 14
21 475.65 humidity 70 720 > th dose dependent rect. 15 11
26 476.16 humidity 80 720 > th dose dependent rect. 9 15
30 476.69 humidity 60 1440 > th dose dependent rect. 19 21
41 477.07 humidity 60 720 > th dose dependent rect. 11 15
123 481.08 humidity 70 720 > th dose dependent rect. 10 22
197 483.07 humidity 60 1440 > th dose dependent no NA NA
206 483.24 humidity 60 1440 > th dose dependent rect. 5 23
214 483.41 humidity 60 1440 > th dose dependent rect. 13 23
229 483.84 humidity 60 1440 > th dose dependent rect. 3 23
306 485.48 humidity 80 1440 > th dose independent rect. 6 20
319 485.76 humidity 80 1440 > th dose independent rect. 13 23
322 485.78 humidity 80 1440 > th dose independent rect. 18 23
368 486.53 humidity 80 720 > th dose dependent rect. 3 22
375 486.72 humidity 80 1440 > th dose independent rect. 20 23
377 486.74 humidity 80 1440 < th dose independent rect. 6 20
435 487.51 humidity 80 1440 > th dose independent rect. 23 23
464 487.81 humidity 80 720 > th dose independent rect. 10 13
469 487.85 humidity 80 1440 > th dose independent no NA NA
479 487.98 humidity 80 1440 < th dose independent rect. 18 23
484 488.04 humidity 80 1440 < th dose independent rect. 13 23
494 488.22 humidity 80 1440 < th dose independent rect. 20 23
528 488.67 humidity 80 1440 < th dose independent rect. 23 23
582 489.15 humidity 80 1440 > th dose independent rect. 11 23
624 489.51 humidity 80 1440 > th dose independent rect. 9 23
633 489.61 humidity 80 1440 < th dose independent no NA NA
654 489.76 humidity 90 720 < th dose dependent sin 12 NA
664 489.89 humidity 90 1440 < th dose dependent rect. 19 20
794 491.40 humidity 80 1440 < th dose independent rect. 11 23
816 491.59 humidity 80 1440 < th dose independent rect. 9 23
869 492.11 humidity 80 720 > th dose independent sin 19 NA
880 492.22 humidity 80 720 > th dose independent rect. 14 8