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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0350900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0602) R2 : 0.438
β1 : -0.114 (0.22) R2dD : 0.000199 R2D : -0.00542
β2 : 1.05 (0.182) R2dC : 0.0598 R2C : -0.118
β3 : 5.1 (0.287) R2dE : 0.526 R2E : 0.329
β4 : 3.87 (0.706) R2dD*C : 0.0346 R2D*C : 0.0186
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.32 (0.128) R2dN8 : 0.0106 R2N8 : 0.00358
σ : 1.12
deviance : 582.27
__
_____
C
peak time of C : 18.8
E
wheather : humidity
threshold : 51.12
memory length : 860
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 10.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
570.91 1.12 3.94 -0.413 1.38 5.42 6.1 4.62 -0.292 17.5 59.29 731 10.2 --
582.27 1.12 3.96 -0.114 1.05 5.1 3.87 -- -0.32 18.8 51.12 860 10.9 --
628.18 1.17 3.91 -0.188 0.0327 4.35 -- 1.22 -0.259 16.6 58.68 806 12.2 --
608.57 1.15 3.94 -0.234 1.79 5.15 -- -- -0.174 20.7 59 889 9.91 --
628.16 1.17 3.9 -0.193 -- 4.32 -- 1.14 -0.258 -- 58.38 814 12.2 --
822.52 1.34 3.92 -0.265 1.86 -- -0.768 -- -0.314 2.35 -- -- -- --
824.39 1.34 3.92 -0.243 1.86 -- -- -- -0.309 2.2 -- -- -- --
612.78 1.15 3.9 0.0606 -- 4.27 -- -- -0.238 -- 3.742 1209 14.1 --
609.51 1.15 3.95 -- 1.77 5.01 -- -- -0.169 21.2 58.21 928 10.1 --
1030.04 1.5 3.9 -0.165 -- -- -- -- -0.264 -- -- -- -- --
825.95 1.34 3.91 -- 1.85 -- -- -- -0.282 2.2 -- -- -- --
612.64 1.15 3.9 -- -- 4.21 -- -- -0.255 -- 2.482 1210 14.1 --
1030.76 1.5 3.9 -- -- -- -- -- -0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 561.81 humidity 70 720 > th dose dependent rect. 15 9
6 566.86 humidity 80 720 > th dose dependent rect. 19 2
8 567.26 humidity 70 720 > th dose dependent rect. 18 5
18 571.23 humidity 60 720 > th dose dependent sin 16 NA
86 583.46 humidity 80 720 > th dose independent rect. 15 7
103 586.94 humidity 80 720 > th dose independent rect. 12 10
180 597.89 humidity 70 1440 < th dose independent rect. 18 22
207 601.21 humidity 70 1440 > th dose independent rect. 18 22
250 606.27 humidity 70 1440 < th dose independent rect. 9 7
257 606.98 humidity 70 1440 < th dose independent rect. 10 5
270 608.19 humidity 80 720 > th dose independent sin 19 NA
278 608.92 humidity 90 720 < th dose dependent rect. 18 6
282 609.22 humidity 70 1440 > th dose independent rect. 9 7
283 609.26 humidity 90 720 < th dose dependent rect. 17 8
289 609.70 humidity 60 1440 > th dose dependent rect. 11 3
298 610.28 humidity 70 1440 < th dose independent sin 23 NA
307 610.63 humidity 70 1440 < th dose independent rect. 9 11
404 612.49 humidity 70 1440 < th dose independent no NA NA
462 612.62 humidity 70 1440 > th dose independent sin 0 NA
483 613.65 humidity 70 1440 > th dose independent rect. 2 14
486 613.69 humidity 70 1440 > th dose independent rect. 4 12
493 613.74 humidity 70 1440 > th dose independent rect. 22 18
517 614.27 humidity 70 1440 > th dose independent rect. 9 22
519 614.29 humidity 70 1440 > th dose independent rect. 9 18
521 614.30 humidity 70 1440 > th dose independent rect. 9 20
604 615.69 humidity 70 1440 > th dose independent rect. 2 18
608 615.72 humidity 70 1440 > th dose independent rect. 4 16
613 615.73 humidity 70 1440 > th dose independent rect. 2 21
620 615.75 humidity 70 1440 > th dose independent rect. 4 19
628 615.76 humidity 70 1440 > th dose independent rect. 22 22
635 615.77 humidity 70 1440 > th dose independent rect. 4 23
673 615.81 humidity 70 1440 > th dose independent no NA NA
749 616.38 humidity 90 1440 < th dose dependent rect. 19 22
813 617.86 humidity 60 1440 > th dose dependent sin 23 NA
856 618.82 humidity 90 1440 < th dose dependent rect. 3 20
864 618.93 humidity 90 1440 < th dose dependent rect. 11 23
894 619.38 humidity 60 1440 > th dose dependent rect. 3 19
910 619.55 humidity 90 1440 < th dose dependent rect. 3 14
976 620.17 humidity 90 1440 < th dose dependent no NA NA