Os09g0349100 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0349100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.91	(0.0194)	R²	:	0.327
β₁	:	0.0278	(0.0711)	R²_dD	:	0.000236	R²_D	:	-0.00197
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	-2.16	(0.813)	R²_dE	:	0.0706	R²_E	:	-0.328
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	18.4	(2.28)	R²_dD*E	:	0.654	R²_D*E	:	0.257
γ₁	:	0.0124	(0.0412)	R²_dN8	:	0.00018	R²_N8	:	-0.00194
σ	:	0.361
deviance	:	60.01
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	0.2012
memory length	:	73
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	6.06
open length of G	:	0.805

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
58.89	0.361	2.9	0.0192	0.148	-1.86	0.122	17.4	0.0105	9.43	0.09097	77	5.97	0.931
86.58	0.437	2.92	0.0283	0.19	-0.08	0.389	--	0.00466	9.03	0.6946	97	5.92	0.858
58.76	0.357	2.9	0.0303	0.144	-2.16	--	18.2	0.0112	9.51	0.1767	72	6.06	0.802
86.78	0.434	2.92	0.0317	0.202	-0.212	--	--	0.00746	8.96	0.0558	355	5.92	0.836
60.01	0.361	2.91	0.0278	--	-2.16	--	18.4	0.0124	--	0.2012	73	6.06	0.805
86.59	0.436	2.92	0.0294	0.19	--	0.391	--	0.00505	9.03	--	--	--	--
87.12	0.437	2.92	0.0427	0.189	--	--	--	0.00516	8.9	--	--	--	--
85.77	0.431	2.94	0.0603	--	0.585	--	--	-0.0258	--	3.223	119	6.03	0.68
86.84	0.434	2.92	--	0.201	-0.205	--	--	-0.00365	8.93	0.09984	355	5.93	0.827
89.16	0.441	2.93	0.0427	--	--	--	--	0.00647	--	--	--	--	--
87.16	0.437	2.92	--	0.189	--	--	--	0.000409	8.89	--	--	--	--
77.84	0.411	2.89	--	--	1.26	--	--	0.0732	--	0.4518	62	6.93	0.0336
89.21	0.441	2.93	--	--	--	--	--	0.00174	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	72.41	radiation	20.0	30	> th	dose independent	rect.	7	1
17	73.25	wind	1.0	90	< th	dose dependent	rect.	6	1
66	74.42	atmosphere	1005.0	10	< th	dose independent	rect.	8	1
94	77.01	radiation	10.0	30	> th	dose dependent	rect.	7	1
228	78.79	radiation	20.0	10	> th	dose independent	sin	11	NA
253	79.39	wind	1.0	90	< th	dose dependent	rect.	6	5
287	79.83	radiation	20.0	10	< th	dose independent	sin	11	NA
336	80.23	humidity	90.0	30	< th	dose independent	rect.	6	2
340	80.27	humidity	90.0	90	> th	dose independent	rect.	6	1
406	80.94	precipitation	0.1	720	> th	dose independent	rect.	20	3
407	80.94	precipitation	0.1	720	> th	dose dependent	rect.	20	3
410	80.97	wind	5.0	720	< th	dose independent	rect.	22	8
431	81.27	atmosphere	1005.0	10	< th	dose independent	rect.	4	5
487	81.83	temperature	25.0	90	< th	dose dependent	rect.	6	1
490	81.85	wind	3.0	10	> th	dose independent	rect.	7	1
492	81.86	atmosphere	1005.0	270	< th	dose independent	rect.	4	1
512	81.98	temperature	25.0	10	< th	dose independent	rect.	7	1
519	81.99	atmosphere	1005.0	10	< th	dose independent	rect.	2	7
522	82.01	humidity	90.0	30	< th	dose independent	rect.	2	6
529	82.05	wind	7.0	720	> th	dose dependent	rect.	21	4
531	82.07	wind	1.0	90	< th	dose independent	rect.	6	1
546	82.12	humidity	80.0	90	> th	dose dependent	rect.	6	1
576	82.25	wind	1.0	10	> th	dose dependent	rect.	6	2
581	82.29	wind	7.0	720	> th	dose independent	rect.	21	4
587	82.31	radiation	20.0	10	> th	dose independent	rect.	12	21
602	82.37	wind	7.0	720	> th	dose dependent	rect.	21	1
623	82.48	wind	7.0	720	> th	dose independent	rect.	21	1
656	82.58	wind	5.0	720	> th	dose independent	rect.	23	6
660	82.60	wind	5.0	720	> th	dose dependent	rect.	23	1
675	82.65	wind	5.0	720	> th	dose dependent	rect.	23	6
686	82.69	wind	5.0	720	> th	dose independent	rect.	23	2
699	82.71	atmosphere	1015.0	90	< th	dose dependent	rect.	6	1
706	82.74	temperature	20.0	90	> th	dose independent	rect.	6	1
718	82.79	wind	1.0	720	> th	dose dependent	rect.	20	1
734	82.86	humidity	90.0	10	< th	dose dependent	rect.	6	2
741	82.89	wind	5.0	720	> th	dose dependent	rect.	1	3
744	82.90	atmosphere	1005.0	90	> th	dose independent	rect.	3	8
748	82.91	atmosphere	1000.0	30	> th	dose independent	rect.	6	2
752	82.91	radiation	1.0	1440	< th	dose dependent	rect.	21	1
817	83.01	temperature	25.0	30	> th	dose dependent	rect.	3	4
853	83.04	wind	5.0	720	> th	dose independent	rect.	1	1
858	83.04	radiation	20.0	10	< th	dose independent	rect.	22	12
877	83.07	atmosphere	1005.0	10	< th	dose independent	rect.	24	9
880	83.08	wind	5.0	720	< th	dose independent	rect.	23	2
884	83.08	wind	7.0	720	< th	dose dependent	rect.	23	2
896	83.11	wind	3.0	720	> th	dose independent	rect.	20	1
905	83.13	humidity	50.0	4320	< th	dose independent	rect.	9	1
917	83.13	atmosphere	1005.0	270	> th	dose independent	rect.	1	8
927	83.13	humidity	50.0	4320	< th	dose dependent	rect.	9	1