Os09g0344700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0344700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.16 | 0.271 | 10.2 | -0.0382 | 0.423 | 0.648 | -0.485 | -0.54 | -0.14 | 4.1 | 23.91 | 10 | -- | -- |
| 33.21 | 0.27 | 10.2 | 0.0372 | 0.415 | 0.61 | -0.382 | -- | -0.116 | 4.18 | 23.91 | 10 | -- | -- |
| 33.58 | 0.272 | 10.2 | 0.0315 | 0.419 | 0.625 | -- | -0.0625 | -0.118 | 4.39 | 23.91 | 10 | -- | -- |
| 33.58 | 0.272 | 10.2 | 0.0399 | 0.418 | 0.62 | -- | -- | -0.116 | 4.39 | 23.91 | 10 | -- | -- |
| 39.87 | 0.296 | 10.2 | 0.108 | -- | 0.338 | -- | -0.0443 | -0.0372 | -- | 26.7 | 4 | -- | -- |
| 39.22 | 0.294 | 10.2 | 0.139 | 0.2 | -- | -0.513 | -- | -0.0408 | 4.71 | -- | -- | -- | -- |
| 39.48 | 0.294 | 10.2 | 0.143 | 0.219 | -- | -- | -- | -0.0378 | 6.22 | -- | -- | -- | -- |
| 39.86 | 0.294 | 10.2 | 0.111 | -- | 0.327 | -- | -- | -0.037 | -- | 26.7 | 3 | -- | -- |
| 33.54 | 0.27 | 10.2 | -- | 0.453 | 0.621 | -- | -- | -0.115 | 4.67 | 23.94 | 77 | -- | -- |
| 41.97 | 0.303 | 10.2 | 0.149 | -- | -- | -- | -- | -0.033 | -- | -- | -- | -- | -- |
| 40.02 | 0.296 | 10.2 | -- | 0.221 | -- | -- | -- | -0.0538 | 6.18 | -- | -- | -- | -- |
| 40.17 | 0.295 | 10.2 | -- | -- | 0.347 | -- | -- | -0.0493 | -- | 26.7 | 2 | -- | -- |
| 42.56 | 0.305 | 10.2 | -- | -- | -- | -- | -- | -0.0496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.39 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 32.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 7 | 32.61 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 9 | 32.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 11 | 32.69 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 20 | 32.89 | temperature | 10 | 90 | > th | dose dependent | sin | 0 | NA |
| 50 | 33.14 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 10 |
| 70 | 33.28 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 74 | 33.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 77 | 33.30 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 82 | 33.31 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 108 | 33.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 14 |
| 116 | 33.37 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 194 | 33.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 223 | 33.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 262 | 33.58 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 295 | 33.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 10 |
| 323 | 33.68 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 19 |
| 349 | 33.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 10 |
| 354 | 33.77 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 428 | 33.85 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 15 |
| 484 | 33.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 571 | 34.06 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 579 | 34.06 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 590 | 34.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 593 | 34.09 | temperature | 25 | 90 | < th | dose independent | sin | 1 | NA |
| 629 | 34.15 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 630 | 34.15 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 13 |
| 640 | 34.16 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 16 |
| 788 | 34.34 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 810 | 34.37 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 837 | 34.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 924 | 34.47 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 4 |
| 957 | 34.49 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 964 | 34.50 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 9 |
| 974 | 34.51 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |