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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0344500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.63 (0.119) R2 : 0.723
β1 : -3.52 (0.863) R2dD : 0.0951 R2D : -0.311
β2 : 1.82 (0.192) R2dC : 0.0564 R2C : 0.0526
β3 : 3.45 (0.422) R2dE : 0.182 R2E : -0.282
β4 : 3 (0.75) R2dD*C : 0.00986 R2D*C : 0.0232
β5 : -38.7 (3.43) R2dD*E : 0.868 R2D*E : 0.154
γ1 : 3.42 (0.191) R2dN8 : 0.341 R2N8 : 0.256
σ : 1.48
deviance : 990.72
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C
peak time of C : 13.8
E
wheather : temperature
threshold : 27.54
memory length : 5323
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.08
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
990.72 1.48 7.63 -3.52 1.82 3.45 3 -38.7 3.42 13.8 27.54 5323 8.08 --
1264.56 1.67 6.62 5.56 2.18 -1.5 4.15 -- 4.46 14.4 27.54 5323 8.08 --
1021.91 1.49 7.62 -3.91 1.83 3.82 -- -42.7 3.58 13.8 27.67 5289 6.9 --
1216.02 1.62 6.48 5.79 1.79 -2.57 -- -- 4.53 13.8 34.9 1521 8.55 --
1212.41 1.62 7.69 -3.89 -- 3.63 -- -44 3.54 -- 28.04 5319 6.9 --
1289.45 1.68 6.6 5.43 1.95 -- 3.72 -- 4.5 13.9 -- -- -- --
1342.77 1.72 6.59 5.54 1.95 -- -- -- 4.52 13.8 -- -- -- --
1341.3 1.71 6.6 5.56 -- -2 -- -- 4.54 -- -204.6 47520 4.15 --
2096.19 2.13 6.77 -- 1.74 -2.18 -- -- 3.72 13.7 35.1 1018 8.39 --
1574.23 1.85 6.61 5.46 -- -- -- -- 4.48 -- -- -- -- --
2153 2.17 6.73 -- 1.85 -- -- -- 3.91 13.7 -- -- -- --
1577.22 1.85 7 -- -- 4.04 -- -- 2.65 -- -225.6 44353 2.57 --
2361.86 2.27 6.75 -- -- -- -- -- 3.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1013.51 radiation 10.0 43200 < th dose dependent rect. 7 2
3 1014.76 radiation 40.0 43200 > th dose independent rect. 13 2
22 1022.78 radiation 20.0 43200 > th dose independent rect. 11 5
23 1023.02 radiation 10.0 43200 < th dose dependent rect. 6 7
25 1023.39 radiation 10.0 43200 < th dose dependent rect. 6 5
26 1024.02 radiation 20.0 43200 > th dose independent rect. 12 3
27 1024.24 radiation 20.0 43200 > th dose independent rect. 10 7
62 1026.45 radiation 10.0 43200 < th dose dependent rect. 6 10
82 1027.64 radiation 10.0 43200 > th dose independent rect. 15 19
84 1028.15 radiation 20.0 43200 > th dose independent sin 19 NA
113 1030.51 temperature 30.0 4320 > th dose independent rect. 14 1
119 1031.17 radiation 10.0 43200 > th dose independent sin 11 NA
121 1031.44 radiation 40.0 43200 > th dose independent sin 14 NA
127 1031.97 radiation 20.0 43200 < th dose dependent rect. 9 7
148 1033.04 temperature 30.0 4320 < th dose independent rect. 14 17
150 1033.12 temperature 30.0 4320 < th dose independent rect. 14 14
153 1033.22 temperature 30.0 4320 < th dose independent rect. 14 2
155 1033.29 temperature 30.0 4320 < th dose independent rect. 14 10
156 1033.30 temperature 30.0 4320 < th dose independent rect. 14 8
160 1033.39 temperature 30.0 4320 < th dose independent rect. 14 5
197 1035.17 temperature 25.0 4320 < th dose independent rect. 5 3
201 1035.36 radiation 10.0 43200 > th dose independent rect. 7 1
207 1036.22 radiation 20.0 43200 < th dose dependent rect. 12 4
259 1036.87 radiation 20.0 43200 > th dose independent no NA NA
340 1037.14 temperature 30.0 4320 > th dose independent rect. 14 5
401 1038.52 temperature 25.0 4320 > th dose independent rect. 5 3
421 1040.00 radiation 10.0 43200 < th dose dependent rect. 7 16
445 1040.69 radiation 10.0 43200 < th dose dependent rect. 22 18
446 1040.69 radiation 10.0 43200 < th dose dependent rect. 19 21
452 1040.82 radiation 30.0 43200 < th dose dependent rect. 11 1
487 1041.59 temperature 25.0 4320 > th dose independent rect. 6 1
489 1041.76 wind 1.0 14400 < th dose dependent rect. 20 8
496 1042.17 radiation 10.0 43200 < th dose dependent sin 2 NA
497 1042.19 temperature 25.0 4320 < th dose independent rect. 6 1
620 1043.76 humidity 70.0 43200 < th dose independent rect. 17 1
705 1045.82 radiation 10.0 43200 < th dose independent rect. 9 1
822 1048.62 radiation 20.0 4320 < th dose independent rect. 15 17
824 1048.71 humidity 60.0 43200 < th dose dependent rect. 13 1
834 1048.92 wind 9.0 43200 < th dose independent rect. 16 2
888 1049.56 precipitation 0.1 43200 > th dose independent rect. 11 2
889 1049.56 precipitation 0.1 43200 > th dose dependent rect. 11 2
907 1049.79 temperature 25.0 4320 > th dose dependent rect. 17 16
918 1049.84 radiation 20.0 1440 < th dose independent rect. 16 20
944 1050.00 wind 9.0 43200 < th dose independent rect. 21 1
953 1050.27 radiation 10.0 1440 < th dose independent rect. 11 22