Os09g0343600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os09g0343600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.85 | 0.679 | 8.19 | -0.627 | 1.1 | -1.05 | 0.845 | -0.0192 | -0.064 | 17.9 | 8.028 | 9 | -- | -- |
| 208.85 | 0.673 | 8.19 | -0.628 | 1.1 | -1.05 | 0.848 | -- | -0.064 | 17.9 | 8.017 | 8 | -- | -- |
| 209.82 | 0.675 | 8.18 | -0.631 | 1.08 | -1.05 | -- | -0.0363 | -0.0767 | 17.8 | 8.026 | 5 | -- | -- |
| 209.77 | 0.675 | 8.19 | -0.631 | 1.1 | -1.07 | -- | -- | -0.0692 | 17.7 | 7.917 | 5 | -- | -- |
| 268.82 | 0.764 | 8.18 | -0.658 | -- | -1.06 | -- | 0.0525 | -0.0997 | -- | 6.01 | 6 | -- | -- |
| 244.47 | 0.733 | 8.21 | -0.546 | 1.59 | -- | 0.651 | -- | -0.0631 | 20.9 | -- | -- | -- | -- |
| 245.91 | 0.734 | 8.21 | -0.568 | 1.59 | -- | -- | -- | -0.0634 | 20.9 | -- | -- | -- | -- |
| 266.6 | 0.76 | 8.18 | -0.659 | -- | -1.08 | -- | -- | -0.102 | -- | 5.169 | 4 | -- | -- |
| 219.5 | 0.69 | 8.17 | -- | 1.1 | -1.08 | -- | -- | -0.00836 | 17.7 | 6.85 | 5 | -- | -- |
| 389.73 | 0.922 | 8.16 | -0.568 | -- | -- | -- | -- | -0.0744 | -- | -- | -- | -- | -- |
| 254.42 | 0.746 | 8.19 | -- | 1.59 | -- | -- | -- | -0.000129 | 20.9 | -- | -- | -- | -- |
| 277.1 | 0.775 | 8.17 | -- | -- | -1.08 | -- | -- | -0.0658 | -- | 5.17 | 4 | -- | -- |
| 398.24 | 0.931 | 8.15 | -- | -- | -- | -- | -- | -0.0114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 201.06 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 9 | 202.85 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 16 |
| 11 | 203.16 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 12 | 203.69 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 17 | 205.08 | radiation | 10 | 10 | < th | dose dependent | sin | 0 | NA |
| 20 | 205.41 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 31 | 206.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 32 | 206.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 19 |
| 43 | 207.11 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 18 |
| 72 | 208.19 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 75 | 208.22 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 79 | 208.36 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 102 | 209.28 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 14 |
| 104 | 209.35 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 21 |
| 114 | 209.52 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 117 | 209.66 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 120 | 209.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 121 | 209.79 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 135 | 210.44 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 17 |
| 137 | 210.46 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 19 |
| 141 | 210.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 161 | 211.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 192 | 211.53 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 16 | 3 |
| 195 | 211.61 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 16 |
| 210 | 211.90 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 12 |
| 215 | 211.96 | humidity | 70 | 90 | > th | dose independent | rect. | 1 | 18 |
| 220 | 212.05 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 6 |
| 231 | 212.26 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 249 | 212.45 | radiation | 20 | 30 | < th | dose independent | rect. | 1 | 21 |
| 264 | 212.59 | temperature | 30 | 90 | < th | dose independent | rect. | 15 | 4 |
| 269 | 212.65 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 9 |
| 277 | 212.73 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 281 | 212.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 290 | 212.87 | humidity | 50 | 270 | > th | dose dependent | rect. | 24 | 10 |
| 307 | 213.03 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 2 |
| 310 | 213.05 | radiation | 40 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 326 | 213.17 | radiation | 10 | 10 | > th | dose independent | sin | 22 | NA |
| 359 | 213.54 | radiation | 40 | 30 | < th | dose independent | rect. | 3 | 17 |
| 375 | 213.74 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 9 |
| 388 | 213.80 | humidity | 60 | 10 | > th | dose dependent | sin | 1 | NA |
| 403 | 213.95 | humidity | 60 | 270 | > th | dose independent | rect. | 14 | 3 |
| 432 | 214.21 | humidity | 60 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 440 | 214.24 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 468 | 214.45 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 471 | 214.49 | humidity | 90 | 90 | < th | dose independent | rect. | 22 | 17 |
| 486 | 214.69 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 14 |
| 508 | 214.83 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 11 |
| 509 | 214.83 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 516 | 214.86 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 15 | 4 |
| 524 | 214.92 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 23 |
| 543 | 215.02 | humidity | 90 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 575 | 215.23 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 579 | 215.26 | radiation | 1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 581 | 215.28 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 587 | 215.30 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 601 | 215.32 | radiation | 20 | 270 | < th | dose independent | rect. | 24 | 9 |
| 634 | 215.54 | radiation | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 646 | 215.60 | humidity | 70 | 270 | > th | dose independent | rect. | 24 | 9 |
| 673 | 215.71 | temperature | 30 | 90 | < th | dose independent | rect. | 1 | 18 |
| 695 | 215.77 | radiation | 10 | 10 | < th | dose independent | rect. | 8 | 12 |
| 708 | 215.85 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 2 |
| 757 | 216.03 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 16 |
| 778 | 216.16 | radiation | 10 | 10 | < th | dose independent | sin | 22 | NA |
| 797 | 216.25 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 2 |
| 851 | 216.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 882 | 216.61 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 20 |
| 895 | 216.68 | radiation | 1 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 898 | 216.70 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 918 | 216.78 | radiation | 10 | 270 | > th | dose independent | rect. | 7 | 6 |
| 944 | 216.88 | humidity | 90 | 270 | < th | dose dependent | rect. | 19 | 19 |
| 958 | 216.94 | temperature | 25 | 90 | > th | dose independent | rect. | 22 | 17 |
| 966 | 216.99 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 9 |
| 985 | 217.07 | radiation | 40 | 90 | < th | dose independent | rect. | 1 | 20 |
| 993 | 217.10 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |