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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0343400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.07 (0.0416) R2 : 0.777
β1 : 0.793 (0.158) R2dD : 0.0146 R2D : -0.0197
β2 : 4.82 (0.138) R2dC : 1.01 R2C : 0.633
β3 : 1.33 (0.14) R2dE : 0.0843 R2E : -0.321
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3 (0.424) R2dD*E : 0.028 R2D*E : 0.0115
γ1 : 1.1 (0.0976) R2dN8 : 0.106 R2N8 : -0.0107
σ : 0.762
deviance : 267.81
__
_____
C
peak time of C : 18.4
E
wheather : temperature
threshold : 25
memory length : 31
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
267.17 0.768 5.08 0.759 4.81 1.34 0.75 -2.53 1.09 18.4 24.99 31 22.7 --
276.41 0.774 5.06 0.656 4.79 1.44 2.95 -- 1.13 18.4 24.76 44 22.5 --
267.81 0.762 5.07 0.793 4.82 1.33 -- -3 1.1 18.4 25 31 22.8 --
297.76 0.804 5.07 0.595 4.85 1.46 -- -- 1.13 18.4 24.7 49 22.5 --
324.46 0.839 5.07 0.283 -- -3.98 -- -2.68 0.609 -- 34.9 2 23.4 --
324.46 0.844 5.17 0.352 3.99 -- 2.73 -- 0.609 18.6 -- -- -- --
343.13 0.867 5.16 0.312 4 -- -- -- 0.617 18.6 -- -- -- --
343.13 0.863 5.07 0.312 -- -3.99 -- -- 0.617 -- 63.83 2 23.4 --
304.53 0.813 5.08 -- 4.89 1.44 -- -- 1.12 18.4 24.75 48 22.6 --
1176.26 1.6 5.09 0.215 -- -- -- -- 0.536 -- -- -- -- --
345.69 0.87 5.17 -- 4 -- -- -- 0.583 18.6 -- -- -- --
345.69 0.866 5.07 -- -- -3.98 -- -- 0.583 -- 100.8 3 23.4 --
1177.47 1.6 5.09 -- -- -- -- -- 0.512 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 266.10 temperature 25.0 30 > th dose independent rect. 24 14
3 267.64 temperature 25.0 30 < th dose independent sin 5 NA
6 268.40 temperature 25.0 30 > th dose independent rect. 4 10
11 269.34 temperature 25.0 30 < th dose independent rect. 24 12
12 269.39 temperature 25.0 30 < th dose independent rect. 24 14
35 273.15 temperature 25.0 30 > th dose independent sin 5 NA
65 277.54 temperature 30.0 90 < th dose dependent rect. 1 10
69 277.78 temperature 25.0 30 < th dose independent rect. 3 11
71 277.90 temperature 20.0 30 > th dose dependent rect. 4 10
73 277.92 temperature 25.0 30 < th dose independent rect. 3 9
99 279.28 temperature 20.0 270 > th dose independent rect. 4 9
107 279.57 humidity 90.0 10 < th dose independent rect. 23 15
113 280.04 temperature 25.0 90 > th dose independent rect. 14 6
122 280.51 temperature 20.0 30 > th dose dependent rect. 6 8
139 281.10 temperature 25.0 30 > th dose independent rect. 14 9
160 281.85 temperature 20.0 10 > th dose dependent rect. 2 12
176 282.30 humidity 90.0 10 < th dose independent rect. 4 10
190 283.11 radiation 20.0 270 > th dose independent rect. 14 2
194 283.31 radiation 20.0 270 > th dose independent rect. 14 17
195 283.34 humidity 90.0 10 < th dose independent rect. 2 12
223 283.73 temperature 20.0 10 > th dose dependent rect. 24 14
234 284.14 temperature 30.0 10 < th dose dependent rect. 1 11
258 284.90 humidity 90.0 30 < th dose independent rect. 6 8
261 285.04 temperature 15.0 30 > th dose dependent rect. 8 6
268 285.22 temperature 25.0 270 > th dose independent rect. 14 3
302 286.20 temperature 25.0 90 < th dose dependent rect. 3 8
305 286.26 temperature 15.0 30 > th dose dependent rect. 14 14
314 286.42 temperature 30.0 90 < th dose dependent rect. 19 6
315 286.44 humidity 90.0 30 < th dose independent rect. 8 6
330 286.77 temperature 20.0 30 > th dose independent rect. 8 6
341 287.02 temperature 15.0 30 > th dose dependent rect. 14 9
365 287.22 temperature 15.0 30 > th dose dependent rect. 14 7
366 287.29 temperature 30.0 90 < th dose dependent rect. 17 8
368 287.34 temperature 25.0 90 < th dose dependent rect. 5 6
373 287.37 humidity 90.0 30 > th dose independent sin 3 NA
374 287.37 temperature 15.0 270 > th dose independent rect. 8 14
375 287.40 temperature 30.0 10 < th dose dependent rect. 1 14
378 287.42 humidity 90.0 10 < th dose independent rect. 20 20
388 287.55 temperature 25.0 10 < th dose dependent rect. 15 9
404 287.72 radiation 10.0 270 > th dose independent rect. 16 1
412 287.85 temperature 25.0 10 > th dose independent rect. 16 4
425 287.99 temperature 25.0 270 < th dose dependent rect. 14 9
429 288.01 temperature 25.0 90 < th dose dependent rect. 14 11
454 288.30 humidity 70.0 10 > th dose dependent rect. 1 13
465 288.42 temperature 20.0 270 > th dose independent rect. 8 5
466 288.42 radiation 10.0 30 > th dose independent rect. 8 6
470 288.47 temperature 30.0 10 < th dose dependent sin 4 NA
485 288.61 radiation 10.0 270 > th dose dependent rect. 14 17
490 288.68 wind 7.0 10 < th dose independent rect. 21 17
497 288.71 temperature 20.0 30 > th dose dependent rect. 14 12
499 288.73 temperature 30.0 270 < th dose dependent rect. 17 6
502 288.75 temperature 25.0 30 < th dose independent rect. 5 5
508 288.79 humidity 80.0 10 < th dose independent rect. 10 4
510 288.81 atmosphere 1000.0 90 > th dose dependent rect. 14 5
516 288.89 temperature 10.0 30 > th dose dependent rect. 14 18
536 289.02 temperature 10.0 30 > th dose dependent rect. 21 17
548 289.16 radiation 10.0 270 > th dose dependent rect. 14 3
585 289.35 humidity 90.0 30 > th dose independent rect. 24 14
620 289.55 temperature 15.0 270 > th dose dependent rect. 12 8
645 289.69 wind 7.0 270 < th dose independent rect. 12 7
646 289.69 temperature 15.0 30 > th dose dependent rect. 14 16
676 289.80 wind 1.0 270 > th dose dependent rect. 14 3
679 289.81 humidity 60.0 10 > th dose dependent rect. 1 18
696 289.90 wind 1.0 270 > th dose independent rect. 19 17
713 289.98 precipitation 0.1 10 < th dose independent rect. 14 6
714 289.98 precipitation 0.1 10 < th dose dependent rect. 14 6
739 290.10 temperature 25.0 30 < th dose independent rect. 5 9
759 290.20 wind 7.0 30 < th dose independent rect. 14 6
781 290.28 atmosphere 1010.0 30 < th dose independent rect. 14 18
782 290.29 wind 3.0 270 > th dose independent rect. 14 3
805 290.33 temperature 15.0 90 > th dose independent rect. 19 19
834 290.53 temperature 20.0 30 > th dose independent rect. 14 14
849 290.54 wind 7.0 30 < th dose independent rect. 14 18
898 290.74 humidity 90.0 270 < th dose independent rect. 14 3
912 290.80 atmosphere 1015.0 270 < th dose independent rect. 23 9
938 290.93 radiation 30.0 270 < th dose dependent sin 14 NA
939 290.93 atmosphere 995.0 270 > th dose dependent rect. 14 3
948 290.98 humidity 70.0 10 > th dose dependent sin 3 NA
965 291.07 temperature 25.0 10 > th dose independent rect. 16 7
969 291.10 radiation 20.0 270 > th dose independent sin 14 NA
980 291.14 humidity 70.0 10 > th dose dependent rect. 1 16
985 291.18 temperature 15.0 270 > th dose independent rect. 17 21
990 291.18 humidity 50.0 270 > th dose dependent rect. 22 10
999 291.24 wind 1.0 270 > th dose independent rect. 17 21