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Os09g0343200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ankyrin repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.72 (0.0776) R2 : 0.803
β1 : 1.2 (0.313) R2dD : 0.00884 R2D : -0.0231
β2 : 7.79 (0.188) R2dC : 0.757 R2C : 0.676
β3 : 5.41 (0.481) R2dE : 0.068 R2E : -0.0225
β4 : 4.59 (0.791) R2dD*C : 0.0147 R2D*C : 0.00887
β5 : -7.54 (1.9) R2dD*E : 0.00968 R2D*E : -0.0167
γ1 : 1.86 (0.168) R2dN8 : 0.0802 R2N8 : 0.0207
σ : 1.4
deviance : 882.61
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C
peak time of C : 20.3
E
wheather : humidity
threshold : 79.74
memory length : 1504
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 22.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
882.61 1.4 8.72 1.2 7.79 5.41 4.59 -7.54 1.86 20.3 79.74 1504 22.2 --
916.26 1.41 8.77 0.914 7.77 4.78 5.02 -- 1.72 20.3 79 1522 21.8 --
908.1 1.4 8.81 1.02 8.9 8.39 -- -17.6 1.42 19.9 78 1640 0.746 --
982.95 1.46 8.76 0.657 7.72 4.88 -- -- 1.75 20.4 79.01 1503 22 --
4086.89 2.98 8.43 1.75 -- 8.17 -- -14.6 1.54 -- 77 1417 2.02 --
1125.71 1.57 8.87 0.0379 7.53 -- 4.61 -- 1.35 20.4 -- -- -- --
1192.04 1.62 8.87 -0.106 7.52 -- -- -- 1.35 20.4 -- -- -- --
1262.4 1.65 8.56 1.36 -- 8.81 -- -- 1.9 -- 39 2720 20.3 --
988.04 1.46 8.79 -- 7.71 4.74 -- -- 1.68 20.3 79 1505 22.1 --
4341.32 3.08 8.67 -0.146 -- -- -- -- 1.27 -- -- -- -- --
1192.34 1.62 8.87 -- 7.52 -- -- -- 1.36 20.4 -- -- -- --
1196.8 1.61 8.63 -- -- 9.35 -- -- 1.5 -- 38.04 2784 20.8 --
4341.88 3.08 8.67 -- -- -- -- -- 1.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 874.60 humidity 80 1440 > th dose independent rect. 5 9
3 874.75 humidity 80 1440 < th dose independent rect. 5 9
31 890.35 humidity 90 1440 < th dose dependent rect. 3 11
52 895.76 humidity 80 1440 > th dose independent sin 4 NA
55 896.26 humidity 80 1440 < th dose independent sin 4 NA
57 896.91 humidity 50 1440 > th dose dependent rect. 4 10
69 900.05 humidity 60 90 > th dose dependent rect. 23 16
77 901.28 humidity 60 90 > th dose dependent rect. 23 18
108 906.24 humidity 70 1440 > th dose independent rect. 17 21
112 906.71 humidity 70 1440 > th dose independent rect. 18 19
116 907.05 humidity 90 1440 < th dose dependent sin 4 NA
118 907.36 humidity 70 1440 < th dose independent rect. 17 20
120 907.39 humidity 80 1440 < th dose dependent sin 7 NA
155 910.30 humidity 60 10 > th dose dependent rect. 1 15
161 910.49 humidity 80 1440 < th dose dependent rect. 20 17
203 913.75 humidity 90 10 < th dose dependent sin 5 NA
207 914.07 humidity 50 1440 > th dose dependent sin 3 NA
220 915.25 humidity 80 90 > th dose independent rect. 23 18
233 916.55 humidity 60 10 > th dose dependent sin 5 NA
240 917.12 humidity 70 1440 > th dose independent sin 9 NA
322 921.19 humidity 80 10 > th dose independent rect. 1 15
325 921.63 radiation 20 90 < th dose dependent rect. 23 16
336 922.28 humidity 70 1440 < th dose independent sin 9 NA
356 923.24 humidity 90 10 < th dose dependent rect. 6 6
432 926.33 humidity 90 1440 < th dose dependent rect. 11 2
520 928.97 humidity 50 1440 > th dose dependent rect. 11 2
554 929.88 radiation 20 90 < th dose dependent rect. 23 18
637 932.68 radiation 30 30 < th dose dependent sin 6 NA
648 932.98 humidity 90 10 < th dose dependent rect. 20 16
653 933.10 radiation 10 90 > th dose independent rect. 17 19
700 933.97 radiation 10 90 > th dose independent rect. 6 6
760 935.11 humidity 90 10 < th dose dependent rect. 22 14
766 935.25 humidity 90 10 < th dose dependent rect. 24 12
792 936.20 radiation 20 1440 < th dose dependent rect. 11 1
965 939.03 humidity 80 1440 < th dose dependent no NA NA
969 939.09 humidity 80 30 < th dose independent rect. 6 6
972 939.12 humidity 80 1440 < th dose dependent rect. 5 23