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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0343100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.97 (0.0448) R2 : 0.675
β1 : 0.864 (0.164) R2dD : 0.0205 R2D : 4.17e-05
β2 : 3.47 (0.121) R2dC : 0.638 R2C : 0.466
β3 : 1.48 (0.127) R2dE : 0.106 R2E : -0.0548
β4 : 3.59 (0.529) R2dD*C : 0.0332 R2D*C : 0.025
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.843 (0.0957) R2dN8 : 0.0737 R2N8 : 0.0279
σ : 0.843
deviance : 322.92
__
_____
C
peak time of C : 18.7
E
wheather : humidity
threshold : 58.98
memory length : 4
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
322.77 0.844 3.97 0.85 3.48 1.5 3.63 0.412 0.837 18.7 58.82 4 -- --
322.92 0.843 3.97 0.864 3.47 1.48 3.59 -- 0.843 18.7 58.98 4 -- --
353.81 0.883 3.95 0.798 3.51 1.41 -- 0.114 0.895 18.6 64.99 4 -- --
353.85 0.882 3.95 0.803 3.51 1.41 -- -- 0.896 18.6 65 4 -- --
935.08 1.43 3.9 0.757 -- 0.399 -- -0.0139 0.76 -- 63.52 7 -- --
366.29 0.897 3.98 0.895 3.18 -- 3.28 -- 0.779 19.8 -- -- -- --
397.44 0.934 3.98 0.809 3.18 -- -- -- 0.783 19.8 -- -- -- --
935.04 1.43 3.9 0.757 -- 0.415 -- -- 0.755 -- 61 5 -- --
370.83 0.902 3.97 -- 3.5 1.41 -- -- 0.807 18.6 65 4 -- --
943.84 1.44 3.9 0.771 -- -- -- -- 0.739 -- -- -- -- --
414.69 0.953 4 -- 3.17 -- -- -- 0.693 19.8 -- -- -- --
950.09 1.44 3.92 -- -- 0.442 -- -- 0.668 -- 59 4 -- --
959.53 1.45 3.92 -- -- -- -- -- 0.653 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.93 humidity 50 10 > th dose dependent rect. 13 21
7 316.07 humidity 80 1440 < th dose independent rect. 11 2
8 316.14 humidity 50 90 > th dose dependent rect. 11 23
9 316.40 humidity 50 270 > th dose dependent rect. 11 21
11 316.65 humidity 50 90 > th dose dependent rect. 13 6
14 317.24 humidity 80 1440 > th dose independent rect. 11 1
27 318.20 humidity 50 90 > th dose dependent rect. 1 18
32 318.52 humidity 50 270 > th dose dependent rect. 22 21
39 319.20 temperature 30 270 < th dose independent rect. 14 3
49 319.84 humidity 60 10 > th dose dependent rect. 1 19
50 320.02 radiation 1 1440 > th dose independent rect. 11 1
77 321.24 temperature 30 90 < th dose independent rect. 14 5
83 321.55 humidity 60 10 > th dose dependent rect. 1 23
93 322.16 humidity 50 10 > th dose dependent rect. 13 7
104 322.44 humidity 60 90 > th dose independent rect. 13 6
106 322.48 humidity 70 1440 > th dose dependent rect. 11 2
123 322.88 humidity 60 10 > th dose dependent rect. 7 23
147 323.38 humidity 60 270 > th dose independent rect. 13 4
154 323.44 humidity 60 10 > th dose dependent rect. 9 23
159 323.48 humidity 60 10 > th dose dependent rect. 22 23
196 324.35 radiation 1 1440 > th dose independent rect. 9 4
198 324.38 humidity 60 10 > th dose dependent no NA NA
202 324.48 atmosphere 1005 270 > th dose independent rect. 12 7
312 326.37 humidity 60 10 > th dose dependent rect. 15 23
327 326.59 humidity 90 270 < th dose independent rect. 8 16
339 326.79 humidity 90 270 < th dose independent rect. 6 18
342 326.81 humidity 90 10 < th dose dependent rect. 8 23
400 327.45 radiation 1 1440 < th dose independent rect. 10 2
401 327.45 radiation 1 1440 < th dose dependent rect. 10 2
406 327.48 atmosphere 1005 270 > th dose dependent rect. 13 6
427 327.74 humidity 70 90 > th dose independent rect. 1 18
439 327.86 humidity 70 10 > th dose dependent rect. 17 23
455 328.03 humidity 90 270 < th dose independent rect. 19 5
470 328.31 humidity 90 10 < th dose dependent rect. 17 23
481 328.38 wind 1 720 < th dose independent rect. 23 2
503 328.57 humidity 90 10 < th dose dependent rect. 10 21
523 328.84 humidity 90 1440 < th dose dependent rect. 11 3
524 328.84 humidity 90 720 < th dose dependent rect. 10 6
552 329.17 humidity 90 10 < th dose dependent rect. 8 20
569 329.33 humidity 90 10 < th dose dependent rect. 8 18
595 329.53 humidity 60 270 > th dose independent rect. 13 18
615 329.70 humidity 50 720 > th dose dependent rect. 11 15
617 329.72 humidity 90 270 > th dose dependent rect. 4 23
622 329.74 radiation 1 1440 < th dose dependent rect. 7 10
638 329.85 humidity 90 270 < th dose independent rect. 19 17
642 329.86 humidity 90 10 < th dose dependent rect. 10 23
652 329.94 humidity 90 270 < th dose independent rect. 17 21
658 329.99 humidity 90 10 < th dose dependent rect. 10 18
660 330.02 humidity 90 270 < th dose independent rect. 17 19
669 330.09 humidity 90 10 < th dose dependent rect. 10 16
677 330.14 humidity 70 10 > th dose independent rect. 13 7
698 330.24 humidity 50 720 > th dose dependent rect. 9 17
700 330.25 humidity 50 720 > th dose dependent rect. 7 19
715 330.32 radiation 1 1440 < th dose independent rect. 9 4
716 330.32 radiation 1 1440 < th dose dependent rect. 9 4
739 330.44 temperature 30 270 < th dose independent rect. 13 18
775 330.63 humidity 50 720 > th dose dependent rect. 7 16
825 330.84 humidity 90 270 > th dose dependent sin 13 NA
827 330.85 humidity 50 720 > th dose dependent sin 21 NA
830 330.86 humidity 90 720 < th dose dependent rect. 10 12
842 330.91 temperature 30 30 < th dose independent rect. 14 18
858 330.92 humidity 90 10 < th dose dependent rect. 15 23
978 331.41 humidity 80 270 > th dose dependent rect. 19 23
987 331.44 humidity 60 720 > th dose dependent rect. 11 12