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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0342000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0529) R2 : 0.285
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.81 (0.216) R2dE : 0.273 R2E : 0.266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.323 (0.111) R2dN8 : 0.0193 R2N8 : 0.0119
σ : 0.994
deviance : 455.16
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 5.741
memory length : 2
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 16.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
432.89 0.978 3.56 0.611 0.92 1.97 0.555 0.79 0.454 18.5 5.204 19 17.1 --
428.9 0.972 3.56 0.627 0.873 2.34 0.887 -- 0.441 18.6 5.204 19 17.1 --
428.58 0.972 3.56 0.619 0.881 2.32 -- 1.35 0.441 18.7 5.204 19 17.1 --
430.7 0.973 3.56 0.633 0.989 2.36 -- -- 0.451 18.5 3.605 11 17.4 --
446.03 0.989 3.55 0.609 -- 2.85 -- 1.48 0.408 -- 6.308 18 16.3 --
509.21 1.06 3.59 0.618 1.44 -- 0.716 -- 0.396 19.1 -- -- -- --
510.56 1.06 3.59 0.604 1.44 -- -- -- 0.398 19.1 -- -- -- --
449.12 0.991 3.55 0.602 -- 2.85 -- -- 0.409 -- 6.308 18 16.3 --
441.25 0.984 3.58 -- 0.983 2.35 -- -- 0.38 18.6 3.605 11 17.4 --
620.57 1.16 3.56 0.576 -- -- -- -- 0.372 -- -- -- -- --
520.16 1.07 3.6 -- 1.44 -- -- -- 0.331 19.1 -- -- -- --
455.16 0.994 3.57 -- -- 2.81 -- -- 0.323 -- 5.741 2 16.1 --
629.31 1.17 3.57 -- -- -- -- -- 0.308 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.44 radiation 10.0 30 < th dose dependent rect. 2 18
2 429.92 humidity 50.0 90 > th dose independent rect. 2 18
5 430.38 radiation 10.0 10 < th dose dependent rect. 13 7
7 430.57 radiation 40.0 90 < th dose dependent rect. 13 7
10 430.87 radiation 10.0 10 < th dose dependent rect. 8 12
23 432.43 radiation 10.0 30 < th dose dependent rect. 6 14
46 434.39 radiation 10.0 90 < th dose independent rect. 13 7
47 434.72 radiation 20.0 43200 < th dose dependent rect. 21 6
50 435.43 humidity 50.0 10 > th dose dependent rect. 2 18
59 436.33 humidity 50.0 90 > th dose independent rect. 13 7
67 436.68 humidity 50.0 90 > th dose independent rect. 15 5
70 436.84 radiation 10.0 90 < th dose independent rect. 1 19
71 436.98 humidity 50.0 10 > th dose dependent rect. 15 5
124 440.32 radiation 40.0 270 < th dose independent rect. 12 7
132 440.70 radiation 10.0 30 < th dose dependent sin 23 NA
152 441.68 humidity 60.0 14400 > th dose independent rect. 21 7
188 442.99 radiation 20.0 30 < th dose dependent rect. 14 20
201 443.51 radiation 1.0 30 < th dose independent rect. 5 15
215 443.78 wind 9.0 10 < th dose independent rect. 2 18
234 444.45 radiation 1.0 30 > th dose independent sin 0 NA
238 444.58 radiation 1.0 30 < th dose independent sin 0 NA
249 444.78 wind 7.0 10 < th dose independent rect. 20 6
255 444.94 temperature 10.0 10 > th dose independent rect. 20 6
256 444.94 temperature 30.0 10 < th dose independent rect. 20 6
257 444.94 humidity 50.0 10 > th dose independent rect. 20 6
260 444.94 atmosphere 995.0 10 > th dose independent rect. 20 6
261 444.94 radiation 1.0 10 < th dose independent rect. 20 6
266 444.94 temperature 10.0 10 > th dose independent rect. 2 18
268 444.94 atmosphere 1015.0 10 < th dose independent rect. 2 18
269 444.94 radiation 1.0 10 < th dose dependent rect. 20 6
333 445.44 temperature 10.0 1440 > th dose independent rect. 21 6
336 445.44 temperature 30.0 1440 < th dose independent rect. 21 6
340 445.44 humidity 50.0 1440 > th dose independent rect. 21 6
346 445.44 atmosphere 995.0 1440 > th dose independent rect. 21 6
347 445.44 radiation 1.0 1440 < th dose independent rect. 21 6
367 445.44 temperature 10.0 1440 > th dose independent rect. 3 18
372 445.47 radiation 40.0 1440 < th dose dependent rect. 21 6
426 446.35 radiation 1.0 10 < th dose independent rect. 7 13
433 446.50 precipitation 0.1 90 < th dose independent rect. 20 6
434 446.50 precipitation 0.1 90 < th dose dependent rect. 20 6
452 446.75 precipitation 0.1 10 < th dose independent rect. 20 6
453 446.75 precipitation 0.1 10 < th dose dependent rect. 20 6
512 447.66 temperature 15.0 1440 > th dose independent rect. 18 3
568 447.80 temperature 30.0 10 < th dose dependent rect. 20 6
677 448.68 wind 9.0 270 < th dose independent rect. 23 21
686 448.85 humidity 50.0 1440 > th dose independent rect. 18 3
688 448.85 radiation 20.0 1440 < th dose independent rect. 18 3
701 448.85 temperature 10.0 1440 > th dose independent rect. 21 21
727 449.13 atmosphere 995.0 10 > th dose independent rect. 2 18
749 449.44 humidity 80.0 10 > th dose independent rect. 2 18
772 449.85 temperature 15.0 270 > th dose independent rect. 23 21
805 450.34 wind 9.0 270 < th dose independent rect. 20 3
807 450.35 temperature 10.0 270 > th dose independent rect. 20 3
808 450.35 temperature 30.0 270 < th dose independent rect. 20 3
809 450.35 humidity 50.0 270 > th dose independent rect. 20 3
812 450.35 atmosphere 995.0 270 > th dose independent rect. 20 3
813 450.35 radiation 1.0 270 < th dose independent rect. 20 3
819 450.35 radiation 20.0 270 < th dose dependent rect. 20 3
822 450.36 radiation 1.0 270 < th dose dependent rect. 20 3
833 450.57 atmosphere 1015.0 270 < th dose independent rect. 23 21
866 450.98 radiation 10.0 90 < th dose independent rect. 14 18
902 451.33 precipitation 0.1 270 < th dose independent rect. 18 21
903 451.33 precipitation 0.1 270 < th dose dependent rect. 18 21
921 451.51 precipitation 0.1 10 < th dose independent rect. 2 18
923 451.51 precipitation 0.1 10 < th dose dependent rect. 2 18
927 451.56 humidity 50.0 90 > th dose independent rect. 17 3
937 451.63 wind 9.0 90 < th dose dependent rect. 15 5
946 451.73 wind 9.0 10 < th dose dependent rect. 20 6
969 452.02 temperature 20.0 270 > th dose independent rect. 12 8
987 452.20 wind 1.0 90 > th dose independent rect. 20 6
988 452.20 wind 9.0 90 < th dose dependent rect. 17 3
1000 452.31 precipitation 0.1 270 < th dose independent rect. 20 3