Os09g0341600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0341600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.98	(0.0182)	R²	:	0.393
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.92	(0.344)	R²_dE	:	0.392	R²_E	:	0.389
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0548	(0.0383)	R²_dN8	:	0.0041	R²_N8	:	0.00156
σ	:	0.342
deviance	:	53.88
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	996.8
memory length	:	119
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	5.12
open length of G	:	0.95

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
52.95	0.339	2.58	2.37	0.0378	-115	-0.508	700	0.0643	20.4	1000	10	5	1
62.6	0.371	2.98	0.022	0.0485	4.32	-0.488	--	0.0671	20.3	1000	10	5	1
53.51	0.343	2.57	2.42	0.0798	-114	--	693	0.0661	16.7	1000	10	5	1
53.77	0.342	2.98	0.045	0.0452	5.86	--	--	0.0681	20.3	996.3	4	4.35	1.58
53.84	0.344	2.57	2.43	--	-114	--	696	0.0638	--	1000	10	5	1
87.3	0.438	2.98	0.0549	0.000552	--	-0.636	--	0.0516	20.2	--	--	--	--
88.47	0.44	2.98	0.075	0.0332	--	--	--	0.0521	14.7	--	--	--	--
53.87	0.342	2.98	0.0406	--	5.9	--	--	0.0642	--	996.4	4	4.59	1.87
53.54	0.341	2.98	--	0.0794	5.93	--	--	0.053	17.1	996.8	119	5.12	0.947
88.54	0.44	2.98	0.0735	--	--	--	--	0.0513	--	--	--	--	--
88.62	0.44	2.98	--	0.0317	--	--	--	0.0438	14.7	--	--	--	--
53.88	0.342	2.98	--	--	5.92	--	--	0.0548	--	996.8	119	5.12	0.95
88.68	0.44	2.98	--	--	--	--	--	0.0431	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	52.95	atmosphere	1000	10	< th	dose independent	rect.	5	1
8	52.95	atmosphere	1000	10	< th	dose dependent	rect.	5	1
27	53.95	temperature	25	30	> th	dose dependent	rect.	5	1
31	57.90	temperature	25	30	> th	dose independent	rect.	5	1
42	64.92	wind	1	10	< th	dose dependent	rect.	5	1
52	67.20	temperature	25	270	> th	dose independent	rect.	2	4
73	67.96	temperature	25	270	> th	dose dependent	rect.	2	4
226	76.04	atmosphere	995	720	< th	dose independent	rect.	18	1
248	76.04	atmosphere	995	720	< th	dose dependent	rect.	18	1
309	77.00	wind	1	10	< th	dose dependent	rect.	5	13
313	77.02	wind	1	10	< th	dose dependent	rect.	5	11
367	78.09	atmosphere	995	1440	> th	dose independent	rect.	17	1
435	78.55	atmosphere	1000	270	< th	dose dependent	sin	7	NA
573	79.62	atmosphere	995	1440	> th	dose independent	rect.	5	14
592	79.76	atmosphere	995	1440	> th	dose independent	rect.	2	17
598	79.79	atmosphere	995	1440	> th	dose independent	rect.	15	4
599	79.79	atmosphere	995	1440	> th	dose independent	rect.	8	11
606	79.84	atmosphere	995	1440	> th	dose independent	rect.	21	22
614	79.90	atmosphere	995	1440	> th	dose independent	rect.	2	23
617	79.91	atmosphere	995	1440	> th	dose independent	rect.	5	18
618	79.91	atmosphere	995	1440	> th	dose independent	rect.	2	21
623	79.92	atmosphere	995	1440	> th	dose independent	rect.	15	8
629	79.94	atmosphere	995	1440	> th	dose independent	rect.	15	16
636	79.97	atmosphere	995	1440	> th	dose independent	rect.	8	15
648	80.01	atmosphere	995	1440	> th	dose independent	rect.	17	14
650	80.02	atmosphere	995	1440	> th	dose independent	sin	13	NA
652	80.02	atmosphere	995	1440	> th	dose independent	sin	20	NA
670	80.05	atmosphere	995	1440	> th	dose independent	rect.	10	9
679	80.07	atmosphere	995	1440	> th	dose independent	rect.	8	23
694	80.10	atmosphere	995	1440	> th	dose independent	rect.	10	13
720	80.17	atmosphere	995	1440	> th	dose independent	rect.	4	23
734	80.22	atmosphere	995	1440	> th	dose independent	rect.	14	23
737	80.23	atmosphere	995	1440	> th	dose independent	rect.	15	12
738	80.23	atmosphere	995	1440	> th	dose independent	rect.	10	23
741	80.24	atmosphere	995	1440	< th	dose independent	rect.	14	1
786	80.24	atmosphere	995	1440	< th	dose dependent	rect.	14	1
830	80.25	atmosphere	995	1440	> th	dose independent	no	NA	NA
831	80.25	atmosphere	995	1440	< th	dose independent	sin	7	NA
855	80.25	atmosphere	995	1440	< th	dose independent	no	NA	NA