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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0341100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.105) R2 : 0.567
β1 : 1.1 (0.319) R2dD : 0.0405 R2D : -0.421
β2 : 1.03 (0.115) R2dC : 0.0818 R2C : -0.142
β3 : -9.04 (1.06) R2dE : 2.39 R2E : -0.724
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.6 (2.56) R2dD*E : 0.952 R2D*E : -1.83
γ1 : -0.735 (0.113) R2dN8 : 0.0676 R2N8 : -0.0348
σ : 0.882
deviance : 358.64
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_____
C
peak time of C : 12.1
E
wheather : radiation
threshold : 40
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
355.34 0.886 5.64 1.17 1.03 -9.1 -0.887 -14.7 -0.724 12.2 40 4321 15 17.2
487.24 1.04 5.26 -2.14 0.669 -0.566 -0.368 -- -1.34 12.1 40 4334 15.2 17.7
358.64 0.882 5.64 1.1 1.03 -9.04 -- -14.6 -0.735 12.1 40 4321 15 17.2
454.04 0.992 5.18 -1.6 0.463 -1.2 -- -- -1.24 10.9 49.9 5816 16.2 17.7
389.31 0.919 5.62 1.04 -- -9.07 -- -14.3 -0.722 -- 40 4327 15 17.2
497.7 1.05 5.25 -2.17 1.25 -- -0.375 -- -1.35 12.1 -- -- -- --
498.3 1.05 5.25 -2.18 1.25 -- -- -- -1.35 12 -- -- -- --
481.43 1.02 5.18 -2.06 -- -1.2 -- -- -1.24 -- 49.93 5842 16.1 17.5
468.57 1.01 5.15 -- 1.31 -1.38 -- -- -1.07 11.7 59.75 47520 15.9 18.1
597.17 1.14 5.28 -2.22 -- -- -- -- -1.37 -- -- -- -- --
623.69 1.17 5.2 -- 1.28 -- -- -- -1.1 12.1 -- -- -- --
554.45 1.1 5.14 -- -- -1.43 -- -- -0.718 -- 57.52 47520 15.8 18.1
727.24 1.26 5.22 -- -- -- -- -- -1.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 365.41 radiation 40 4320 < th dose independent rect. 15 17
2 369.97 radiation 10 4320 < th dose independent rect. 16 8
4 370.02 radiation 10 4320 < th dose independent rect. 16 4
8 370.17 radiation 10 4320 < th dose independent rect. 16 11
15 373.67 radiation 10 4320 < th dose independent rect. 12 18
16 374.44 radiation 10 4320 < th dose independent rect. 12 12
18 374.48 radiation 10 4320 < th dose independent rect. 12 8
22 374.54 radiation 10 4320 < th dose independent rect. 12 15
26 374.59 radiation 10 4320 < th dose independent sin 15 NA
45 377.89 temperature 15 43200 < th dose dependent rect. 3 5
47 377.95 humidity 60 43200 < th dose dependent rect. 19 14
50 378.01 temperature 15 43200 < th dose dependent rect. 4 3
56 378.19 temperature 15 43200 < th dose dependent rect. 5 1
59 378.34 humidity 60 43200 < th dose dependent rect. 19 4
75 378.86 radiation 40 14400 < th dose independent rect. 4 4
100 379.69 temperature 15 43200 < th dose dependent rect. 2 12
118 380.40 temperature 10 43200 > th dose independent rect. 4 1
157 381.17 humidity 80 43200 > th dose dependent rect. 5 1
173 381.36 radiation 40 14400 < th dose independent rect. 17 15
214 381.95 temperature 10 43200 < th dose independent rect. 3 2
219 382.10 radiation 40 4320 < th dose independent rect. 15 5
220 382.10 temperature 15 43200 < th dose dependent sin 3 NA
227 382.26 radiation 40 4320 < th dose independent rect. 15 9
260 383.15 radiation 40 4320 < th dose independent sin 12 NA
274 383.28 radiation 40 14400 < th dose independent rect. 23 9
291 383.46 humidity 50 43200 > th dose independent rect. 8 1
307 383.89 radiation 40 4320 < th dose independent rect. 14 19
309 383.95 humidity 60 43200 < th dose dependent rect. 8 1
329 384.50 temperature 15 43200 < th dose independent rect. 5 3
336 384.97 humidity 50 43200 > th dose independent rect. 20 13
366 385.71 temperature 15 43200 > th dose independent rect. 6 1
378 386.12 humidity 50 43200 < th dose independent rect. 8 1
406 386.57 temperature 15 43200 < th dose dependent rect. 12 22
408 386.59 radiation 1 4320 > th dose dependent rect. 16 14
419 386.68 wind 1 14400 < th dose independent rect. 15 2
434 386.79 temperature 15 43200 < th dose dependent no NA NA
441 386.85 temperature 15 43200 < th dose dependent rect. 20 23
443 386.86 temperature 15 43200 < th dose dependent rect. 16 23
531 387.44 radiation 10 4320 < th dose dependent rect. 16 14
538 387.50 wind 1 14400 < th dose dependent rect. 15 2
595 388.08 humidity 50 43200 > th dose independent rect. 18 15
650 388.91 radiation 1 4320 > th dose dependent rect. 17 12
661 389.15 radiation 1 720 > th dose dependent rect. 17 13
677 389.51 humidity 60 43200 < th dose independent rect. 19 4
704 389.92 wind 1 14400 > th dose independent rect. 15 2
734 390.24 radiation 1 4320 > th dose dependent rect. 17 2
748 390.30 radiation 1 4320 < th dose independent rect. 8 1
749 390.30 radiation 1 4320 < th dose dependent rect. 8 1
809 391.24 humidity 50 43200 > th dose independent rect. 18 4
814 391.37 humidity 50 43200 > th dose independent rect. 18 6
816 391.40 wind 7 43200 > th dose dependent rect. 24 1
822 391.49 temperature 15 43200 < th dose independent rect. 3 14
852 391.86 humidity 60 43200 < th dose independent rect. 21 2
854 391.89 radiation 1 4320 > th dose dependent rect. 14 17
882 392.20 humidity 60 4320 < th dose dependent rect. 11 1
966 392.90 radiation 10 4320 < th dose dependent sin 13 NA
985 392.98 humidity 70 43200 < th dose dependent rect. 21 2
998 393.12 temperature 15 43200 < th dose independent rect. 12 21