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Os09g0341000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.18 (0.0156) R2 : 0.731
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.41 (0.0406) R2dC : 0.713 R2C : 0.712
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.0328) R2dN8 : 0.019 R2N8 : 0.0182
σ : 0.294
deviance : 39.38
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_____
C
peak time of C : 17.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.21 0.275 9.12 0.641 1.4 -0.0511 -0.453 2.46 -0.0295 17.2 10.24 318 -- --
36.93 0.283 9.17 0.224 1.34 0.229 0.0228 -- -0.135 17.3 26.88 70 -- --
34.6 0.274 9.13 0.593 1.41 -0.0739 -- 2.08 -0.042 17.2 10.75 346 -- --
36.93 0.283 9.17 0.232 1.35 0.213 -- -- -0.137 17.3 26.95 69 -- --
95.8 0.456 9.14 0.234 -- 1.16 -- 1.56 -0.18 -- 24.37 272 -- --
37.56 0.287 9.17 0.26 1.41 -- 0.127 -- -0.135 17.2 -- -- -- --
37.6 0.287 9.17 0.26 1.41 -- -- -- -0.134 17.2 -- -- -- --
93.91 0.451 9.18 0.00357 -- 1.3 -- -- -0.286 -- 24.47 271 -- --
38.28 0.288 9.18 -- 1.32 0.268 -- -- -0.165 17.3 26.45 79 -- --
142.06 0.557 9.15 0.21 -- -- -- -- -0.17 -- -- -- -- --
39.38 0.294 9.18 -- 1.41 -- -- -- -0.163 17.2 -- -- -- --
93.91 0.451 9.18 -- -- 1.3 -- -- -0.286 -- 24.46 271 -- --
143.23 0.559 9.16 -- -- -- -- -- -0.193 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.94 humidity 90.0 14400 > th dose dependent rect. 24 8
2 31.95 humidity 90.0 14400 > th dose dependent rect. 21 9
9 32.00 humidity 90.0 14400 > th dose dependent rect. 3 4
11 32.01 humidity 90.0 14400 > th dose dependent rect. 24 2
46 32.26 humidity 90.0 14400 > th dose dependent sin 9 NA
55 32.29 humidity 90.0 14400 > th dose independent rect. 21 9
63 32.32 humidity 90.0 14400 > th dose independent rect. 24 8
92 32.43 wind 9.0 1440 > th dose dependent rect. 21 14
163 32.74 wind 9.0 1440 > th dose independent rect. 21 13
168 32.76 humidity 90.0 14400 > th dose independent rect. 3 4
176 32.79 humidity 90.0 14400 < th dose independent rect. 20 9
180 32.80 humidity 90.0 14400 < th dose independent rect. 21 7
204 32.86 humidity 90.0 14400 > th dose independent rect. 23 2
211 32.87 wind 9.0 1440 < th dose independent rect. 21 14
213 32.87 wind 7.0 1440 > th dose dependent rect. 1 10
228 32.91 humidity 90.0 14400 < th dose independent rect. 22 4
246 32.94 humidity 90.0 14400 > th dose independent sin 9 NA
336 33.10 humidity 90.0 14400 > th dose independent rect. 5 1
391 33.20 temperature 20.0 14400 < th dose dependent rect. 10 1
410 33.23 humidity 90.0 14400 < th dose independent sin 10 NA
411 33.23 wind 7.0 4320 < th dose independent rect. 19 1
425 33.26 temperature 20.0 14400 < th dose independent rect. 12 1
435 33.27 wind 5.0 720 < th dose independent rect. 22 11
443 33.28 temperature 20.0 14400 < th dose independent rect. 11 4
451 33.29 temperature 20.0 14400 > th dose independent rect. 10 6
452 33.29 temperature 20.0 14400 < th dose independent rect. 10 6
460 33.30 temperature 20.0 14400 > th dose independent rect. 11 4
470 33.30 radiation 10.0 720 < th dose dependent rect. 1 7
478 33.31 wind 7.0 1440 > th dose dependent rect. 7 5
484 33.32 precipitation 0.1 14400 < th dose independent rect. 9 2
490 33.32 precipitation 0.1 14400 < th dose dependent rect. 9 2
499 33.33 wind 7.0 4320 > th dose independent rect. 19 1
500 33.33 temperature 20.0 14400 > th dose independent rect. 12 1
506 33.33 humidity 50.0 14400 > th dose dependent rect. 1 1
537 33.36 wind 7.0 1440 < th dose independent rect. 1 10
549 33.37 temperature 30.0 270 < th dose dependent rect. 19 21
618 33.43 wind 9.0 1440 > th dose independent rect. 1 9
641 33.44 wind 5.0 14400 < th dose independent rect. 1 1
642 33.44 temperature 20.0 14400 > th dose independent rect. 9 2
645 33.44 temperature 20.0 14400 < th dose independent rect. 8 3
649 33.44 wind 5.0 720 < th dose independent rect. 5 5
658 33.44 wind 9.0 4320 > th dose dependent rect. 15 8
663 33.45 temperature 20.0 14400 < th dose independent rect. 9 1
673 33.45 wind 9.0 4320 > th dose dependent rect. 15 11
688 33.46 wind 7.0 1440 > th dose dependent rect. 11 1
692 33.46 radiation 1.0 14400 < th dose dependent rect. 24 5
703 33.47 wind 7.0 14400 < th dose independent rect. 23 5
712 33.48 wind 9.0 1440 < th dose independent rect. 9 3
716 33.48 temperature 15.0 720 > th dose independent rect. 10 11
717 33.48 temperature 15.0 720 > th dose independent rect. 9 13
719 33.48 wind 7.0 4320 > th dose dependent rect. 18 3
730 33.49 wind 9.0 4320 < th dose independent rect. 15 11
739 33.50 wind 9.0 4320 > th dose independent rect. 18 4
751 33.51 wind 5.0 14400 > th dose independent rect. 1 1
757 33.51 radiation 1.0 14400 < th dose dependent rect. 4 1
765 33.52 wind 9.0 4320 < th dose independent rect. 15 7
776 33.52 humidity 50.0 14400 > th dose dependent rect. 24 3
785 33.53 wind 7.0 4320 < th dose independent rect. 18 3
787 33.53 wind 9.0 4320 < th dose independent rect. 17 5
793 33.53 humidity 90.0 14400 > th dose dependent no NA NA
794 33.53 wind 5.0 1440 > th dose dependent rect. 21 1
829 33.55 wind 9.0 4320 > th dose dependent rect. 15 2
845 33.56 humidity 50.0 14400 > th dose dependent rect. 22 6
853 33.57 wind 9.0 1440 < th dose independent rect. 7 5
887 33.59 wind 1.0 43200 < th dose independent rect. 16 1
890 33.59 wind 9.0 4320 > th dose independent rect. 15 8
892 33.59 wind 9.0 4320 > th dose independent rect. 15 11
911 33.60 precipitation 0.1 14400 > th dose independent rect. 9 2
919 33.60 wind 9.0 4320 > th dose independent rect. 17 9
926 33.60 wind 1.0 43200 < th dose dependent rect. 16 1
927 33.60 precipitation 0.1 14400 > th dose dependent rect. 9 2
933 33.61 wind 7.0 14400 > th dose independent rect. 23 5
976 33.63 radiation 1.0 14400 < th dose independent rect. 18 11
986 33.63 radiation 10.0 720 < th dose dependent rect. 18 15