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Os09g0340400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0186) R2 : 0.614
β1 : -1.37 (0.068) R2dD : 0.358 R2D : 0.368
β2 : 0.735 (0.0447) R2dC : 0.229 R2C : 0.215
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.149 (0.0396) R2dN8 : 0.0161 R2N8 : 0.04
σ : 0.349
deviance : 55.51
__
_____
C
peak time of C : 1.65
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.15 0.329 11.8 -1.37 0.352 0.54 0.185 0.358 0.178 5.37 8.514 10 -- --
49.4 0.33 11.8 -1.36 0.389 0.444 0.49 -- 0.167 4 8.514 10 -- --
48.9 0.328 11.8 -1.36 0.372 0.559 -- 0.375 0.168 5.61 8.514 10 -- --
49.76 0.331 11.8 -1.37 0.374 0.563 -- -- 0.168 5.67 8.514 10 -- --
51.39 0.334 11.8 -1.34 -- 0.62 -- 0.57 0.172 -- 5.995 190 -- --
54.08 0.345 11.8 -1.35 0.734 -- 0.599 -- 0.153 1.61 -- -- -- --
55.51 0.349 11.8 -1.37 0.735 -- -- -- 0.149 1.65 -- -- -- --
52.82 0.338 11.8 -1.35 -- 0.621 -- -- 0.177 -- 6.66 150 -- --
99.13 0.466 11.8 -- 0.354 0.574 -- -- 0.321 5.97 8.514 10 -- --
88.44 0.439 11.8 -1.34 -- -- -- -- 0.166 -- -- -- -- --
105.08 0.48 11.8 -- 0.71 -- -- -- 0.302 1.6 -- -- -- --
100.27 0.466 11.8 -- -- 0.683 -- -- 0.336 -- 16.44 195 -- --
135.93 0.544 11.8 -- -- -- -- -- 0.314 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.69 temperature 20 14400 > th dose independent rect. 20 2
3 47.71 temperature 20 14400 < th dose independent rect. 20 2
28 48.17 atmosphere 995 43200 < th dose dependent sin 17 NA
31 48.19 atmosphere 995 43200 < th dose dependent rect. 12 14
34 48.24 atmosphere 995 43200 > th dose independent rect. 23 16
35 48.25 atmosphere 995 43200 > th dose independent sin 5 NA
39 48.27 atmosphere 995 43200 < th dose independent sin 4 NA
42 48.28 atmosphere 995 43200 < th dose independent rect. 18 21
59 48.35 atmosphere 995 43200 > th dose independent rect. 17 21
62 48.36 humidity 80 14400 > th dose dependent rect. 5 1
71 48.40 wind 3 14400 > th dose independent rect. 21 1
83 48.46 atmosphere 995 43200 < th dose independent rect. 23 16
84 48.46 wind 3 14400 > th dose dependent rect. 21 1
88 48.47 atmosphere 995 43200 < th dose dependent rect. 12 21
128 48.58 wind 3 14400 < th dose independent rect. 21 1
132 48.58 humidity 50 10 > th dose dependent rect. 24 22
137 48.60 temperature 25 14400 < th dose independent rect. 13 1
147 48.64 wind 9 14400 > th dose independent rect. 20 15
157 48.66 wind 9 14400 > th dose dependent rect. 20 16
166 48.68 temperature 20 1440 > th dose independent rect. 18 9
174 48.70 temperature 20 1440 < th dose independent rect. 18 9
182 48.72 humidity 90 14400 > th dose independent rect. 21 1
198 48.75 wind 9 14400 < th dose independent rect. 20 15
206 48.76 wind 5 43200 < th dose independent rect. 17 15
217 48.78 wind 9 43200 > th dose independent rect. 20 20
218 48.78 wind 7 14400 < th dose dependent rect. 21 1
220 48.78 humidity 90 14400 > th dose dependent rect. 21 1
221 48.78 wind 9 14400 > th dose dependent rect. 18 17
235 48.80 wind 5 43200 > th dose independent rect. 17 15
236 48.80 wind 9 43200 > th dose independent rect. 20 18
237 48.80 wind 3 43200 > th dose dependent rect. 17 15
248 48.82 wind 9 43200 < th dose independent rect. 20 19
251 48.83 temperature 25 14400 > th dose independent rect. 14 1
260 48.83 humidity 70 10 > th dose dependent rect. 8 14
262 48.83 radiation 10 30 < th dose dependent rect. 23 23
269 48.85 temperature 20 14400 > th dose independent sin 16 NA
286 48.86 wind 3 43200 > th dose dependent rect. 18 13
326 48.89 humidity 80 14400 > th dose dependent rect. 3 4
376 48.93 wind 9 43200 > th dose independent rect. 4 12
392 48.94 wind 9 43200 > th dose independent rect. 4 10
393 48.94 wind 9 43200 < th dose independent rect. 4 11
423 48.96 wind 9 43200 > th dose independent rect. 8 6
424 48.96 wind 9 43200 < th dose independent rect. 8 6
435 48.96 wind 9 43200 > th dose independent rect. 23 17
455 48.97 humidity 50 14400 > th dose dependent rect. 2 5
481 48.98 wind 9 43200 > th dose independent rect. 15 23
486 48.98 wind 9 43200 > th dose dependent rect. 12 21
487 48.98 wind 9 43200 > th dose dependent rect. 10 22
510 48.99 wind 3 43200 > th dose dependent rect. 6 1
511 48.99 humidity 70 90 > th dose dependent rect. 13 8
512 48.99 atmosphere 995 43200 < th dose dependent rect. 11 8
529 49.00 temperature 25 14400 < th dose dependent rect. 17 1
558 49.02 wind 9 43200 > th dose independent sin 2 NA
559 49.02 temperature 20 14400 < th dose independent sin 16 NA
569 49.02 wind 9 43200 > th dose independent rect. 13 22
571 49.02 wind 9 14400 < th dose dependent rect. 20 9
580 49.03 wind 9 43200 < th dose independent sin 3 NA
583 49.03 atmosphere 995 43200 < th dose independent rect. 8 7
595 49.03 temperature 20 14400 > th dose independent rect. 7 18
600 49.03 atmosphere 995 43200 < th dose dependent no NA NA
601 49.03 atmosphere 995 43200 < th dose dependent rect. 12 5
603 49.03 wind 1 14400 > th dose dependent rect. 20 9
610 49.03 atmosphere 995 43200 < th dose dependent rect. 21 22
630 49.04 wind 9 43200 > th dose independent rect. 23 22
632 49.04 wind 9 43200 > th dose dependent sin 19 NA
635 49.04 wind 9 43200 > th dose dependent rect. 9 12
659 49.05 wind 9 43200 > th dose independent rect. 4 20
668 49.05 humidity 70 90 > th dose dependent rect. 15 6
680 49.05 atmosphere 995 43200 < th dose dependent rect. 1 23
681 49.05 atmosphere 995 43200 < th dose dependent rect. 4 23
684 49.06 wind 9 43200 > th dose independent no NA NA
687 49.06 humidity 90 14400 < th dose independent rect. 18 1
688 49.06 wind 5 14400 > th dose independent rect. 7 2
733 49.07 wind 9 43200 > th dose independent rect. 4 17
735 49.07 wind 9 43200 > th dose independent rect. 2 19
739 49.07 wind 9 43200 < th dose independent rect. 13 22
744 49.07 humidity 50 10 > th dose dependent rect. 12 10
788 49.08 wind 9 43200 > th dose independent rect. 6 23
791 49.08 wind 3 43200 > th dose dependent sin 11 NA
806 49.08 atmosphere 995 43200 < th dose dependent rect. 4 20
834 49.09 wind 9 43200 > th dose dependent rect. 10 4
844 49.09 wind 7 43200 > th dose dependent rect. 15 20
845 49.09 wind 7 43200 > th dose dependent rect. 20 20
877 49.10 wind 9 43200 < th dose independent rect. 23 22
879 49.10 wind 3 14400 < th dose dependent rect. 24 1
880 49.10 temperature 25 14400 < th dose dependent rect. 9 1
883 49.10 wind 9 43200 > th dose dependent rect. 10 6
902 49.11 wind 3 14400 > th dose independent rect. 21 4
920 49.11 wind 9 43200 > th dose independent rect. 15 20
927 49.11 atmosphere 995 43200 < th dose dependent rect. 14 1
947 49.12 wind 9 43200 > th dose independent rect. 15 18
980 49.12 wind 7 43200 > th dose dependent rect. 15 22
984 49.13 wind 9 43200 > th dose independent sin 11 NA
986 49.13 wind 5 43200 < th dose independent sin 12 NA
987 49.13 wind 9 43200 < th dose independent no NA NA
988 49.13 wind 5 14400 < th dose independent rect. 7 2