Os09g0337300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os09g0337300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 195.31 | 0.657 | 8.94 | -0.554 | 1.57 | 1.28 | 1.74 | -1.68 | 0.486 | 19.2 | 21.59 | 10 | -- | -- |
| 205.91 | 0.668 | 8.94 | -0.55 | 1.51 | 1.46 | 1.17 | -- | 0.47 | 18.4 | 19.93 | 6 | -- | -- |
| 201.61 | 0.661 | 8.93 | -0.57 | 1.58 | 1.35 | -- | -1.2 | 0.52 | 18.9 | 22.03 | 14 | -- | -- |
| 208.07 | 0.672 | 8.94 | -0.543 | 1.55 | 1.29 | -- | -- | 0.478 | 19 | 20 | 4 | -- | -- |
| 309.78 | 0.82 | 8.89 | -0.605 | -- | 1.54 | -- | -0.796 | 0.504 | -- | 7.703 | 6 | -- | -- |
| 238.17 | 0.724 | 8.96 | -0.573 | 2.3 | -- | -0.072 | -- | 0.479 | 21.2 | -- | -- | -- | -- |
| 238.19 | 0.723 | 8.96 | -0.57 | 2.3 | -- | -- | -- | 0.479 | 21.2 | -- | -- | -- | -- |
| 310.85 | 0.821 | 8.89 | -0.607 | -- | 1.54 | -- | -- | 0.501 | -- | 7.386 | 4 | -- | -- |
| 215.66 | 0.684 | 8.92 | -- | 1.57 | 1.32 | -- | -- | 0.532 | 19 | 21.43 | 4 | -- | -- |
| 545.01 | 1.09 | 8.9 | -0.562 | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
| 246.77 | 0.735 | 8.95 | -- | 2.3 | -- | -- | -- | 0.543 | 21.2 | -- | -- | -- | -- |
| 320.51 | 0.834 | 8.88 | -- | -- | 1.53 | -- | -- | 0.57 | -- | 7.182 | 4 | -- | -- |
| 553.33 | 1.1 | 8.88 | -- | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.00 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 6 |
| 10 | 192.16 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 17 |
| 11 | 192.26 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 12 | 192.26 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 13 | 192.32 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 14 | 192.48 | temperature | 20 | 720 | > th | dose independent | sin | 12 | NA |
| 25 | 193.24 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 33 | 193.82 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 67 | 195.60 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 12 |
| 70 | 195.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 75 | 195.72 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 77 | 195.74 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 78 | 195.74 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 82 | 195.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 87 | 195.98 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 89 | 196.06 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 10 |
| 98 | 196.27 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 150 | 197.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 153 | 197.40 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 198 | 198.29 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 211 | 198.49 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 222 | 198.69 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 223 | 198.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 237 | 198.90 | humidity | 80 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 266 | 199.28 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 270 | 199.32 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 368 | 200.39 | radiation | 20 | 10 | < th | dose dependent | sin | 2 | NA |
| 407 | 200.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 415 | 200.85 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 451 | 201.12 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 453 | 201.12 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 472 | 201.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 478 | 201.27 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 480 | 201.28 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 486 | 201.31 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 496 | 201.38 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 519 | 201.53 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 521 | 201.55 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 523 | 201.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 535 | 201.67 | atmosphere | 1005 | 90 | > th | dose dependent | sin | 19 | NA |
| 547 | 201.77 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 16 |
| 573 | 201.92 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 574 | 201.92 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 584 | 201.97 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 658 | 202.42 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 671 | 202.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 744 | 202.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 745 | 202.82 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 780 | 203.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 789 | 203.09 | radiation | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 815 | 203.20 | humidity | 80 | 270 | > th | dose independent | rect. | 23 | 15 |
| 818 | 203.21 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 834 | 203.29 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 835 | 203.29 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 908 | 203.67 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 8 |
| 916 | 203.71 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 942 | 203.85 | radiation | 20 | 10 | < th | dose independent | sin | 4 | NA |
| 951 | 203.89 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 8 |
| 956 | 203.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 957 | 203.91 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 967 | 203.95 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 14 |