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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0336600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.01 (0.0411) R2 : 0.235
β1 : 0.932 (0.15) R2dD : 0.0631 R2D : 0.0374
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.96 (0.203) R2dE : 0.168 R2E : 0.137
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.452 (0.0886) R2dN8 : 0.0561 R2N8 : -0.00163
σ : 0.768
deviance : 271.83
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 82
memory length : 1292
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.13 0.742 4 1.22 0.655 -1.96 1.34 2.03 0.459 16.1 78 1426 -- --
252.76 0.74 4.01 1.04 0.638 -1.84 1.31 -- 0.423 16.2 78 1426 -- --
253.75 0.742 3.99 1.25 0.714 -2.04 -- 2.26 0.466 15.8 77.85 1464 -- --
257.67 0.748 4.01 1.04 0.65 -1.89 -- -- 0.422 16 78 1434 -- --
270.7 0.766 3.98 1.31 -- -2.13 -- 2.02 0.445 -- 77.91 1289 -- --
296.84 0.808 4.03 0.914 0.68 -- 1.65 -- 0.328 16.2 -- -- -- --
304.45 0.817 4.03 0.931 0.689 -- -- -- 0.337 16.2 -- -- -- --
271.83 0.768 4.01 0.932 -- -1.96 -- -- 0.452 -- 82 1292 -- --
280.08 0.779 4.03 -- 0.621 -1.9 -- -- 0.346 16.1 82 1424 -- --
330.18 0.849 4.02 0.903 -- -- -- -- 0.319 -- -- -- -- --
327.28 0.846 4.05 -- 0.671 -- -- -- 0.234 16.2 -- -- -- --
292.2 0.796 4.02 -- -- -1.98 -- -- 0.345 -- 82.31 1285 -- --
351.69 0.875 4.05 -- -- -- -- -- 0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 243.55 humidity 80 1440 < th dose independent rect. 24 17
10 244.07 humidity 80 1440 > th dose independent rect. 24 17
14 244.17 humidity 80 1440 > th dose independent rect. 24 19
15 244.22 humidity 80 1440 < th dose independent rect. 9 7
18 244.24 humidity 80 1440 < th dose independent sin 1 NA
25 244.44 humidity 80 1440 > th dose independent rect. 9 7
38 244.73 humidity 80 1440 > th dose independent sin 1 NA
84 246.00 humidity 70 1440 > th dose dependent rect. 9 7
94 246.21 humidity 80 720 > th dose dependent rect. 5 18
98 246.26 humidity 70 1440 > th dose dependent rect. 10 5
106 246.38 humidity 80 1440 > th dose independent rect. 9 10
184 248.05 humidity 70 1440 > th dose dependent sin 23 NA
240 248.96 humidity 70 1440 > th dose dependent rect. 9 12
291 249.64 humidity 70 720 > th dose dependent rect. 10 21
298 249.72 humidity 70 720 > th dose dependent sin 17 NA
345 250.17 humidity 60 1440 > th dose dependent rect. 24 21
364 250.28 humidity 60 1440 > th dose dependent rect. 1 16
443 250.67 humidity 60 1440 > th dose dependent rect. 18 22
496 250.87 humidity 80 1440 > th dose independent rect. 18 23
505 250.91 humidity 80 1440 < th dose independent rect. 18 23
550 251.09 humidity 80 1440 < th dose independent rect. 9 23
557 251.10 humidity 80 1440 > th dose independent rect. 9 23
572 251.13 humidity 80 1440 < th dose independent rect. 4 22
590 251.17 humidity 80 1440 > th dose independent rect. 4 23
604 251.20 humidity 80 1440 < th dose independent no NA NA
612 251.22 humidity 80 1440 > th dose independent no NA NA
655 251.29 humidity 90 1440 < th dose dependent rect. 10 6
660 251.30 humidity 60 1440 > th dose dependent no NA NA
799 251.65 humidity 60 720 > th dose dependent rect. 14 17
844 251.81 humidity 90 1440 < th dose dependent rect. 10 21
953 252.23 humidity 50 1440 > th dose dependent rect. 13 23
965 252.28 humidity 90 1440 < th dose dependent rect. 18 22
976 252.32 humidity 90 1440 < th dose dependent rect. 20 21
996 252.38 humidity 90 1440 < th dose dependent rect. 24 17