FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0334900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Major facilitator superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.88 (0.0436) R2 : 0.661
β1 : 1.44 (0.159) R2dD : 0.0651 R2D : 0.0746
β2 : 1.38 (0.124) R2dC : 0.12 R2C : 0.277
β3 : 1.6 (0.0988) R2dE : 0.265 R2E : 0.466
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.35 (0.0949) R2dN8 : 0.0145 R2N8 : 0.0249
σ : 0.803
deviance : 297.19
__
_____
C
peak time of C : 7.76
E
wheather : temperature
threshold : 20.96
memory length : 763
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.64
open length of G : 2.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.35 0.803 4.89 1.28 1.39 1.55 1.45 -0.652 0.334 8.08 20.84 765 3.58 2.65
293.2 0.798 4.88 1.42 1.42 1.55 1.29 -- 0.357 7.96 20.93 764 3.63 2.64
297.05 0.803 4.89 1.39 1.37 1.6 -- -0.236 0.336 7.81 20.94 764 3.58 2.61
297.19 0.803 4.88 1.44 1.38 1.6 -- -- 0.35 7.76 20.96 763 3.64 2.6
348.42 0.869 4.92 1.33 -- 2.19 -- -0.119 0.299 -- 20.8 683 3.03 2.98
404.07 0.942 4.76 1.83 2.41 -- 1.91 -- 0.771 9.32 -- -- -- --
417.03 0.956 4.76 1.89 2.41 -- -- -- 0.771 9.25 -- -- -- --
348.42 0.869 4.94 1.33 -- 2.21 -- -- 0.28 -- 20.81 689 2.91 3.25
349.22 0.87 4.93 -- 1.28 1.8 -- -- 0.146 7.37 20.97 772 3.52 2.62
755.22 1.28 4.82 1.88 -- -- -- -- 0.783 -- -- -- -- --
511.61 1.06 4.8 -- 2.41 -- -- -- 0.561 9.19 -- -- -- --
393.05 0.923 4.97 -- -- 2.29 -- -- 0.115 -- 20.85 701 2.83 3.2
848.92 1.36 4.87 -- -- -- -- -- 0.573 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 300.32 temperature 20 720 > th dose dependent rect. 4 3
4 304.20 temperature 10 720 > th dose dependent rect. 20 11
5 304.82 temperature 10 720 > th dose dependent rect. 19 13
9 306.60 temperature 10 720 > th dose dependent rect. 3 4
30 310.15 temperature 20 720 > th dose independent rect. 4 2
78 318.04 temperature 25 720 < th dose dependent rect. 21 11
81 318.54 temperature 25 720 < th dose dependent rect. 22 9
95 318.89 temperature 20 720 > th dose dependent sin 9 NA
105 319.51 temperature 25 720 < th dose dependent sin 9 NA
106 319.59 temperature 30 720 < th dose dependent rect. 23 6
138 321.38 temperature 10 720 > th dose dependent rect. 19 20
154 321.85 temperature 20 4320 > th dose independent rect. 22 2
156 321.93 temperature 20 4320 > th dose independent rect. 21 4
182 322.78 temperature 20 4320 < th dose independent rect. 21 4
188 323.00 temperature 20 4320 < th dose independent rect. 20 6
233 324.21 temperature 20 720 > th dose independent rect. 19 12
268 325.11 temperature 20 1440 < th dose independent rect. 4 1
302 325.81 temperature 30 1440 < th dose dependent rect. 4 1
303 325.83 temperature 25 4320 < th dose dependent rect. 1 1
307 325.88 temperature 25 4320 < th dose dependent rect. 21 1
331 326.10 temperature 25 4320 < th dose dependent rect. 21 7
339 326.18 temperature 25 4320 < th dose dependent rect. 21 5
383 326.66 temperature 25 4320 < th dose dependent rect. 1 3
387 326.70 temperature 25 4320 < th dose dependent rect. 23 5
395 326.74 temperature 25 4320 < th dose dependent rect. 23 3
404 326.86 temperature 10 4320 > th dose dependent rect. 1 3
407 326.92 temperature 10 4320 > th dose dependent rect. 23 5
435 327.04 temperature 10 4320 > th dose dependent rect. 23 3
510 327.53 temperature 20 4320 < th dose independent sin 13 NA
533 327.73 temperature 20 4320 < th dose independent rect. 1 1
606 328.21 temperature 20 4320 > th dose independent sin 13 NA
681 328.56 temperature 10 270 > th dose dependent rect. 2 22
864 329.72 temperature 20 4320 > th dose independent rect. 1 1
906 329.95 temperature 25 4320 < th dose dependent sin 13 NA
992 330.33 temperature 15 90 > th dose dependent rect. 4 21