Os09g0334500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 74.
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Os09g0334500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 74.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.41 | 0.471 | 11.6 | 1.58 | 0.399 | 0.71 | -0.237 | 0.255 | 0.143 | 19.9 | 59 | 1307 | -- | -- |
| 100.33 | 0.467 | 11.5 | 1.59 | 0.395 | 0.735 | -0.276 | -- | 0.147 | 19.9 | 58 | 1321 | -- | -- |
| 100.36 | 0.467 | 11.6 | 1.58 | 0.401 | 0.712 | -- | 0.278 | 0.15 | 19.8 | 57.81 | 1293 | -- | -- |
| 100.47 | 0.467 | 11.5 | 1.6 | 0.402 | 0.738 | -- | -- | 0.147 | 19.8 | 57.89 | 1294 | -- | -- |
| 108.91 | 0.486 | 11.5 | 1.6 | -- | 0.711 | -- | 0.233 | 0.142 | -- | 58 | 1344 | -- | -- |
| 117.53 | 0.508 | 11.5 | 1.45 | 0.408 | -- | -0.0958 | -- | 0.297 | 19.1 | -- | -- | -- | -- |
| 117.55 | 0.508 | 11.5 | 1.45 | 0.408 | -- | -- | -- | 0.297 | 19 | -- | -- | -- | -- |
| 108.98 | 0.486 | 11.5 | 1.59 | -- | 0.725 | -- | -- | 0.14 | -- | 57 | 1346 | -- | -- |
| 138.07 | 0.547 | 11.6 | -- | 0.477 | 0.92 | -- | -- | 0.22 | 19.6 | 63.95 | 33939 | -- | -- |
| 126.32 | 0.525 | 11.5 | 1.45 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 173.24 | 0.616 | 11.6 | -- | 0.393 | -- | -- | -- | 0.135 | 19.2 | -- | -- | -- | -- |
| 139.7 | 0.55 | 11.5 | -- | -- | 1.4 | -- | -- | 0.148 | -- | 64 | 34450 | -- | -- |
| 181.41 | 0.629 | 11.5 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.49 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 5 |
| 2 | 98.60 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 3 | 98.63 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 4 | 98.72 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 5 | 98.91 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 6 | 98.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 7 | 98.97 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 8 | 99.00 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 15 |
| 9 | 99.05 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 22 | 99.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 23 | 99.14 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 25 | 99.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 4 |
| 31 | 99.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 41 | 99.38 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 42 | 99.38 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 47 | 99.42 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 54 | 99.49 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 5 |
| 70 | 99.60 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 81 | 99.70 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 90 | 99.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 94 | 99.78 | humidity | 70 | 1440 | < th | dose dependent | rect. | 12 | 20 |
| 96 | 99.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 153 | 99.91 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 154 | 99.91 | humidity | 60 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 193 | 99.97 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 6 |
| 197 | 99.99 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 255 | 100.21 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 261 | 100.22 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 264 | 100.24 | humidity | 60 | 1440 | > th | dose independent | sin | 16 | NA |
| 273 | 100.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 335 | 100.39 | humidity | 70 | 1440 | < th | dose dependent | sin | 16 | NA |
| 358 | 100.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 366 | 100.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 410 | 100.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 422 | 100.49 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 428 | 100.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 434 | 100.51 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 521 | 100.61 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 533 | 100.67 | temperature | 30 | 1440 | < th | dose independent | sin | 14 | NA |
| 536 | 100.69 | humidity | 60 | 1440 | < th | dose independent | sin | 18 | NA |
| 549 | 100.73 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 551 | 100.73 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 558 | 100.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 560 | 100.75 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 636 | 100.93 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 647 | 100.95 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 669 | 100.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 686 | 101.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 769 | 101.13 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 862 | 101.23 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 863 | 101.23 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 867 | 101.23 | humidity | 60 | 1440 | > th | dose independent | rect. | 23 | 20 |
| 945 | 101.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 949 | 101.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 959 | 101.27 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 964 | 101.28 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |