Os09g0333600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).
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Os09g0333600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.44 | 0.557 | 5.64 | -0.0235 | 0.845 | 1.06 | -0.858 | -1.36 | -0.524 | 11.8 | 24.8 | 1457 | -- | -- |
| 142.41 | 0.556 | 5.68 | -0.417 | 0.894 | 0.976 | -1 | -- | -0.626 | 11.8 | 24.55 | 1461 | -- | -- |
| 143.61 | 0.558 | 5.64 | -0.0198 | 0.85 | 1.07 | -- | -1.48 | -0.516 | 11.8 | 24.8 | 1457 | -- | -- |
| 145.72 | 0.562 | 5.69 | -0.472 | 0.87 | 0.955 | -- | -- | -0.655 | 11.9 | 24.6 | 1499 | -- | -- |
| 163.99 | 0.596 | 5.64 | -0.034 | -- | 1.28 | -- | -1.58 | -0.444 | -- | 24.8 | 928 | -- | -- |
| 171.25 | 0.613 | 5.77 | -0.775 | 0.889 | -- | -0.878 | -- | -0.998 | 12 | -- | -- | -- | -- |
| 174.58 | 0.619 | 5.77 | -0.809 | 0.893 | -- | -- | -- | -1 | 12.1 | -- | -- | -- | -- |
| 170.04 | 0.607 | 5.7 | -0.388 | -- | 1.18 | -- | -- | -0.573 | -- | 24.8 | 977 | -- | -- |
| 150.6 | 0.572 | 5.67 | -- | 0.87 | 0.949 | -- | -- | -0.572 | 12 | 24.01 | 1552 | -- | -- |
| 224.75 | 0.701 | 5.79 | -0.838 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 191.84 | 0.648 | 5.75 | -- | 0.904 | -- | -- | -- | -0.911 | 12.2 | -- | -- | -- | -- |
| 174.7 | 0.616 | 5.67 | -- | -- | 1.28 | -- | -- | -0.489 | -- | 24.8 | 985 | -- | -- |
| 243.26 | 0.728 | 5.77 | -- | -- | -- | -- | -- | -0.921 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.25 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 6 | 139.67 | temperature | 25.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 8 | 139.70 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 14 | 139.83 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 7 | 17 |
| 34 | 140.02 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 41 | 140.09 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 50 | 140.21 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 59 | 140.30 | temperature | 25.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 75 | 140.40 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 114 | 140.59 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 115 | 140.59 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 134 | 140.67 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 156 | 140.77 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 171 | 140.82 | temperature | 25.0 | 1440 | < th | dose independent | no | NA | NA |
| 247 | 141.12 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 12 | 8 |
| 265 | 141.24 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 267 | 141.25 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 319 | 141.48 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 338 | 141.56 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 342 | 141.59 | temperature | 25.0 | 1440 | > th | dose independent | no | NA | NA |
| 434 | 142.08 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 461 | 142.29 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 533 | 143.14 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 11 | 22 |
| 566 | 143.40 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 568 | 143.41 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 636 | 143.87 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 645 | 143.91 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 649 | 143.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 651 | 143.94 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 658 | 143.96 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 678 | 144.02 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 687 | 144.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 704 | 144.14 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 723 | 144.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 6 |
| 727 | 144.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 748 | 144.28 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 842 | 144.45 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 846 | 144.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 903 | 144.57 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 941 | 144.63 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 962 | 144.66 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 16 | NA |