Os09g0331100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os09g0331100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.4 | 0.721 | 2.89 | -0.0129 | 0.328 | -0.731 | 0.517 | 3.13 | -0.0651 | 17.5 | 1.011 | 16 | -- | -- |
| 241.46 | 0.729 | 2.86 | 0.12 | 0.3 | -0.491 | 0.832 | -- | -0.029 | 17.3 | 1.011 | 16 | -- | -- |
| 236 | 0.715 | 2.89 | -0.0193 | 0.331 | -0.737 | -- | 3.25 | -0.0633 | 17.2 | 1.007 | 16 | -- | -- |
| 243.17 | 0.731 | 2.86 | 0.12 | 0.302 | -0.48 | -- | -- | -0.0253 | 17.1 | 1.011 | 16 | -- | -- |
| 240.88 | 0.723 | 2.89 | 0.00114 | -- | -0.544 | -- | 3.06 | -0.0706 | -- | 1.098 | 16 | -- | -- |
| 248.98 | 0.74 | 2.86 | 0.179 | 0.161 | -- | 0.751 | -- | -0.0364 | 18 | -- | -- | -- | -- |
| 250.37 | 0.741 | 2.86 | 0.173 | 0.165 | -- | -- | -- | -0.0335 | 17.9 | -- | -- | -- | -- |
| 247.34 | 0.736 | 2.86 | 0.125 | -- | -0.35 | -- | -- | -0.0341 | -- | 1.048 | 16 | -- | -- |
| 243.54 | 0.731 | 2.86 | -- | 0.303 | -0.491 | -- | -- | -0.0383 | 17.1 | 1.011 | 16 | -- | -- |
| 251.77 | 0.741 | 2.86 | 0.168 | -- | -- | -- | -- | -0.0373 | -- | -- | -- | -- | -- |
| 251.15 | 0.741 | 2.86 | -- | 0.162 | -- | -- | -- | -0.0527 | 17.9 | -- | -- | -- | -- |
| 247.74 | 0.735 | 2.86 | -- | -- | -0.361 | -- | -- | -0.0478 | -- | 1.048 | 16 | -- | -- |
| 252.51 | 0.742 | 2.86 | -- | -- | -- | -- | -- | -0.0559 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 225.66 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 2 | 225.86 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 3 | 226.03 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 9 | 226.25 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 10 | 226.27 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 13 | 226.30 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 14 | 226.33 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 20 | 226.43 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 22 | 226.43 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 23 | 226.43 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 26 | 226.43 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 27 | 226.43 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 29 | 226.43 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 34 | 226.43 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 35 | 226.43 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 36 | 226.43 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 41 | 226.43 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 226.46 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 49 | 226.76 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 50 | 226.90 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 60 | 226.90 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 72 | 227.41 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 79 | 227.96 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 90 | 228.81 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 92 | 228.86 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 93 | 228.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 96 | 228.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 100 | 228.86 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 109 | 228.86 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 110 | 228.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 130 | 228.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 133 | 228.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 149 | 229.09 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 5 |
| 183 | 229.55 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 15 | 20 |
| 185 | 229.67 | humidity | 70.0 | 10 | < th | dose independent | rect. | 15 | 3 |
| 189 | 229.91 | humidity | 60.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 196 | 230.43 | wind | 1.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 197 | 230.45 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 199 | 230.49 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 14 | 2 |
| 202 | 230.64 | wind | 1.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 210 | 231.26 | humidity | 60.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 230 | 231.53 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 22 |
| 234 | 231.57 | temperature | 30.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 250 | 231.62 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 251 | 231.62 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 253 | 231.69 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 254 | 231.70 | wind | 1.0 | 270 | < th | dose independent | rect. | 12 | 2 |
| 312 | 232.15 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 5 | 1 |
| 313 | 232.22 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 320 | 232.22 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 330 | 232.26 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 16 |
| 341 | 232.40 | humidity | 60.0 | 270 | < th | dose independent | rect. | 14 | 2 |
| 349 | 232.68 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 350 | 232.68 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 473 | 233.58 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 6 | NA |
| 495 | 233.71 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 15 | 3 |
| 541 | 233.78 | temperature | 30.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 544 | 233.81 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 23 |
| 548 | 233.94 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 6 | NA |
| 566 | 233.97 | atmosphere | 995.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 570 | 233.97 | atmosphere | 995.0 | 30 | < th | dose dependent | rect. | 18 | 23 |
| 571 | 233.98 | atmosphere | 995.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 572 | 233.98 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 698 | 233.98 | atmosphere | 995.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 699 | 233.98 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 830 | 234.03 | temperature | 25.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 838 | 234.06 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 15 | 3 |
| 856 | 234.21 | wind | 1.0 | 10 | > th | dose independent | rect. | 18 | 19 |
| 953 | 234.61 | wind | 1.0 | 10 | > th | dose independent | rect. | 18 | 21 |
| 978 | 234.69 | temperature | 25.0 | 30 | > th | dose independent | rect. | 15 | 3 |
| 990 | 234.85 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 5 |