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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0328900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0338) R2 : 0.121
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.617 (0.083) R2dC : 0.107 R2C : 0.102
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.199 (0.071) R2dN8 : 0.0195 R2N8 : 0.0141
σ : 0.636
deviance : 184.93
__
_____
C
peak time of C : 9.53
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.21 0.624 3.05 1.45 0.615 -11.1 0.615 70.9 -0.169 9.61 994.5 1485 -- --
291.88 0.796 3.28 -0.203 0.645 -7.98 -0.457 -- -0.177 11.5 994.5 224 -- --
177.61 0.621 3.04 1.49 0.611 -11.3 -- 71.9 -0.167 9.72 994.7 1454 -- --
179.23 0.628 3.28 0.0882 0.627 1.09 -- -- -0.168 9.47 997.4 12 -- --
199.74 0.658 3.06 1.51 -- -11.5 -- 72.9 -0.165 -- 994.5 1431 -- --
182.98 0.634 3.28 0.104 0.622 -- 0.648 -- -0.186 9.42 -- -- -- --
184.49 0.636 3.28 0.129 0.617 -- -- -- -0.184 9.54 -- -- -- --
201.73 0.664 3.29 0.0785 -- 0.971 -- -- -0.164 -- 998.2 13 -- --
179 0.627 3.28 -- 0.624 1.05 -- -- -0.175 9.46 998 9 -- --
206.97 0.672 3.3 0.124 -- -- -- -- -0.183 -- -- -- -- --
184.93 0.636 3.28 -- 0.617 -- -- -- -0.199 9.53 -- -- -- --
201.85 0.664 3.3 -- -- 0.998 -- -- -0.173 -- 998.1 2 -- --
207.38 0.672 3.3 -- -- -- -- -- -0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.54 atmosphere 1000 30 < th dose dependent rect. 9 1
15 170.53 wind 1 43200 > th dose independent rect. 4 3
19 171.00 humidity 90 90 > th dose independent rect. 14 1
22 171.00 humidity 90 90 > th dose dependent rect. 14 1
29 171.96 radiation 1 10 < th dose independent rect. 15 1
33 172.00 wind 1 43200 < th dose independent rect. 4 3
36 172.09 radiation 1 10 < th dose independent rect. 11 6
52 172.42 atmosphere 1000 90 < th dose dependent rect. 8 6
70 172.71 wind 1 43200 < th dose dependent rect. 4 3
74 172.84 radiation 10 90 < th dose dependent rect. 14 1
85 173.28 wind 1 43200 > th dose independent rect. 24 6
86 173.30 humidity 80 1440 > th dose independent rect. 24 1
97 173.58 wind 1 43200 < th dose dependent rect. 3 5
111 173.84 atmosphere 1000 10 < th dose dependent rect. 9 10
125 174.03 atmosphere 1000 4320 < th dose dependent rect. 8 1
136 174.17 wind 1 43200 < th dose independent rect. 23 7
155 174.42 humidity 90 90 > th dose dependent rect. 10 6
162 174.48 radiation 1 10 < th dose dependent rect. 15 1
165 174.50 wind 1 43200 < th dose independent rect. 24 5
176 174.65 temperature 25 90 < th dose dependent rect. 14 1
183 174.76 radiation 1 10 < th dose dependent rect. 11 5
194 174.82 humidity 90 90 > th dose independent rect. 10 6
197 174.83 wind 1 43200 < th dose dependent rect. 2 9
214 174.96 temperature 25 90 < th dose dependent rect. 3 14
230 175.04 temperature 25 90 < th dose dependent rect. 3 18
254 175.23 atmosphere 995 1440 > th dose independent rect. 6 16
261 175.29 atmosphere 995 1440 > th dose independent rect. 16 8
262 175.29 atmosphere 995 1440 > th dose independent rect. 6 18
268 175.31 humidity 50 720 > th dose dependent rect. 21 7
272 175.31 atmosphere 1000 10 < th dose dependent rect. 9 19
273 175.32 atmosphere 995 14400 > th dose independent rect. 17 1
279 175.36 atmosphere 995 1440 > th dose independent rect. 16 6
286 175.38 atmosphere 995 1440 > th dose independent rect. 10 12
295 175.41 temperature 20 270 < th dose independent rect. 1 15
307 175.44 temperature 20 270 < th dose independent rect. 1 8
314 175.46 temperature 20 270 < th dose independent rect. 1 12
316 175.46 humidity 90 720 < th dose dependent rect. 23 5
323 175.48 atmosphere 1000 10 < th dose independent rect. 9 1
330 175.48 humidity 90 720 < th dose dependent rect. 24 3
338 175.51 atmosphere 995 14400 < th dose independent rect. 17 1
341 175.51 atmosphere 995 14400 < th dose dependent rect. 17 1
366 175.58 temperature 20 270 < th dose independent sin 3 NA
371 175.59 atmosphere 1000 720 < th dose independent rect. 9 1
376 175.60 wind 1 30 > th dose independent rect. 5 1
392 175.62 atmosphere 1000 720 < th dose dependent rect. 22 15
396 175.64 humidity 90 10 < th dose independent rect. 5 1
413 175.66 atmosphere 995 1440 > th dose independent rect. 10 21
429 175.70 atmosphere 995 1440 > th dose independent rect. 6 11
447 175.73 temperature 20 270 > th dose independent sin 3 NA
460 175.75 humidity 80 30 < th dose dependent rect. 19 3
465 175.76 atmosphere 995 1440 > th dose independent rect. 1 23
472 175.78 atmosphere 995 1440 > th dose independent rect. 3 19
473 175.78 atmosphere 1000 720 < th dose dependent sin 5 NA
476 175.79 atmosphere 995 1440 > th dose independent rect. 3 21
478 175.79 humidity 80 30 < th dose dependent rect. 19 7
490 175.82 atmosphere 1000 270 < th dose dependent rect. 6 12
493 175.83 wind 1 14400 < th dose independent rect. 4 1
507 175.85 atmosphere 995 1440 > th dose independent rect. 16 21
524 175.87 humidity 90 720 < th dose dependent rect. 24 1
575 175.95 temperature 30 14400 > th dose independent rect. 11 1
584 175.97 temperature 30 14400 < th dose independent rect. 11 1
599 175.99 atmosphere 1000 720 > th dose independent rect. 6 3
615 176.00 atmosphere 1000 30 > th dose independent rect. 6 23
630 176.02 atmosphere 1000 720 < th dose dependent rect. 1 10
633 176.03 atmosphere 995 1440 > th dose independent rect. 10 7
652 176.05 temperature 20 4320 < th dose independent rect. 21 2
658 176.06 atmosphere 995 1440 > th dose independent rect. 12 12
660 176.06 atmosphere 995 1440 > th dose independent rect. 16 15
665 176.07 temperature 20 90 < th dose dependent sin 1 NA
668 176.07 atmosphere 1000 720 < th dose dependent rect. 22 20
672 176.08 atmosphere 995 1440 > th dose independent rect. 12 10
675 176.08 temperature 30 14400 > th dose dependent rect. 14 1
679 176.08 atmosphere 1000 1440 < th dose dependent rect. 6 12
681 176.09 temperature 20 4320 > th dose independent rect. 21 2
685 176.09 atmosphere 995 1440 > th dose independent rect. 6 22
691 176.09 temperature 10 30 > th dose dependent rect. 6 23
708 176.11 temperature 20 90 < th dose dependent rect. 3 8
722 176.13 temperature 20 10 < th dose independent sin 0 NA
751 176.15 temperature 20 4320 > th dose independent rect. 17 6
771 176.17 temperature 20 4320 < th dose independent rect. 17 6
790 176.18 temperature 20 10 > th dose independent sin 0 NA
791 176.18 atmosphere 995 1440 > th dose independent sin 22 NA
800 176.18 atmosphere 995 1440 > th dose independent rect. 10 18
812 176.19 atmosphere 995 1440 > th dose independent sin 20 NA
821 176.19 temperature 20 10 < th dose independent rect. 3 17
837 176.20 temperature 25 14400 > th dose dependent rect. 8 1
885 176.22 atmosphere 995 1440 > th dose independent rect. 16 12
900 176.23 temperature 20 4320 < th dose independent rect. 11 13
936 176.25 atmosphere 995 1440 > th dose independent rect. 19 22