Os09g0327600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os09g0327600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.83 | 0.759 | 3.8 | -1.76 | 0.165 | 1.33 | 0.773 | -5.17 | -0.495 | 22.8 | 24.04 | 1414 | -- | -- |
| 266.63 | 0.761 | 3.67 | -0.601 | 0.166 | 1.08 | 0.608 | -- | -0.333 | 22.6 | 19.08 | 7177 | -- | -- |
| 262.51 | 0.755 | 3.79 | -1.74 | 0.203 | 1.27 | -- | -4.84 | -0.495 | 1.21 | 23.78 | 1474 | -- | -- |
| 267.52 | 0.762 | 3.66 | -0.58 | 0.215 | 1.07 | -- | -- | -0.313 | 0.911 | 19.7 | 7266 | -- | -- |
| 264.58 | 0.758 | 3.78 | -1.62 | -- | 1.3 | -- | -4.46 | -0.503 | -- | 23.04 | 1322 | -- | -- |
| 300.82 | 0.813 | 3.58 | 0.0269 | 0.25 | -- | 0.594 | -- | 0.0526 | 0.0566 | -- | -- | -- | -- |
| 302.04 | 0.814 | 3.58 | 0.0011 | 0.26 | -- | -- | -- | 0.0481 | 1.22 | -- | -- | -- | -- |
| 269.98 | 0.765 | 3.66 | -0.575 | -- | 1.09 | -- | -- | -0.297 | -- | 19.84 | 6911 | -- | -- |
| 272.17 | 0.768 | 3.63 | -- | 0.23 | 0.795 | -- | -- | -0.149 | 1.09 | 24.8 | 7327 | -- | -- |
| 306.22 | 0.818 | 3.58 | 0.0112 | -- | -- | -- | -- | 0.0534 | -- | -- | -- | -- | -- |
| 302.04 | 0.813 | 3.58 | -- | 0.26 | -- | -- | -- | 0.048 | 1.22 | -- | -- | -- | -- |
| 274.94 | 0.772 | 3.62 | -- | -- | 0.798 | -- | -- | -0.129 | -- | 24.4 | 7071 | -- | -- |
| 306.22 | 0.817 | 3.58 | -- | -- | -- | -- | -- | 0.0521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 257.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 257.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 258.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 6 | 258.68 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 16 | 258.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 26 | 259.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 28 | 259.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 46 | 259.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 52 | 259.58 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 54 | 259.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 104 | 260.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 115 | 260.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 155 | 261.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 169 | 261.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 171 | 261.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 183 | 261.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 207 | 261.61 | temperature | 25 | 4320 | > th | dose independent | rect. | 3 | 10 |
| 243 | 261.71 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 292 | 261.89 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 296 | 261.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 12 |
| 302 | 261.97 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 314 | 262.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 9 |
| 326 | 262.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 328 | 262.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 329 | 262.08 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 10 |
| 337 | 262.12 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 350 | 262.17 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 387 | 262.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 391 | 262.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 432 | 262.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 437 | 262.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 446 | 262.58 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 453 | 262.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 457 | 262.61 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 483 | 262.68 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 496 | 262.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 561 | 263.03 | temperature | 25 | 4320 | > th | dose independent | sin | 4 | NA |
| 577 | 263.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 767 | 263.53 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 792 | 263.62 | temperature | 25 | 4320 | < th | dose independent | sin | 3 | NA |
| 825 | 263.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 833 | 263.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 848 | 263.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 918 | 263.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 926 | 263.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 933 | 263.95 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 948 | 263.97 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 5 |