Os09g0327500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0327500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.27 | 0.627 | 3.73 | 1.32 | 0.277 | -1.52 | -1.23 | 16.7 | -0.328 | 12.6 | 30.18 | 4284 | -- | -- |
| 198.67 | 0.656 | 4.08 | -1.38 | 0.224 | 0.235 | -1.28 | -- | -0.51 | 13 | 26.4 | 47520 | -- | -- |
| 184.25 | 0.632 | 3.73 | 1.35 | 0.297 | -1.54 | -- | 17.1 | -0.331 | 11.4 | 30.15 | 4240 | -- | -- |
| 197.99 | 0.655 | 4.13 | -1.43 | 0.31 | 0.511 | -- | -- | -0.715 | 10.6 | 30.64 | 18473 | -- | -- |
| 188.99 | 0.64 | 3.75 | 1.24 | -- | -1.37 | -- | 15.4 | -0.24 | -- | 29.26 | 4100 | -- | -- |
| 199.95 | 0.663 | 4.05 | -1.13 | 0.229 | -- | -1.3 | -- | -0.39 | 12.7 | -- | -- | -- | -- |
| 206.23 | 0.673 | 4.05 | -1.18 | 0.265 | -- | -- | -- | -0.4 | 10.6 | -- | -- | -- | -- |
| 202.3 | 0.662 | 4.11 | -1.4 | -- | 0.544 | -- | -- | -0.649 | -- | 30.99 | 18556 | -- | -- |
| 242.76 | 0.726 | 4.04 | -- | 0.278 | 0.095 | -- | -- | -0.325 | 10.3 | 31.51 | 15201 | -- | -- |
| 210.57 | 0.678 | 4.06 | -1.19 | -- | -- | -- | -- | -0.401 | -- | -- | -- | -- | -- |
| 242.96 | 0.729 | 4.02 | -- | 0.274 | -- | -- | -- | -0.268 | 10.9 | -- | -- | -- | -- |
| 220.73 | 0.692 | 3.97 | -- | -- | -0.834 | -- | -- | -0.0202 | -- | -6.582 | 47520 | -- | -- |
| 247.64 | 0.735 | 4.03 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.75 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 6 |
| 4 | 174.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 29 | 176.83 | wind | 1 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 54 | 177.28 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 56 | 177.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 57 | 177.34 | temperature | 30 | 4320 | > th | dose independent | sin | 10 | NA |
| 58 | 177.34 | temperature | 30 | 4320 | < th | dose independent | sin | 10 | NA |
| 63 | 177.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 65 | 177.48 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 18 |
| 67 | 177.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 82 | 177.55 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 114 | 177.59 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 118 | 177.63 | wind | 1 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 120 | 177.65 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 138 | 177.67 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 149 | 177.81 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 13 |
| 175 | 177.88 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 214 | 177.94 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 8 |
| 254 | 177.98 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 269 | 178.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 295 | 178.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 382 | 178.30 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 555 | 178.55 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 580 | 178.79 | wind | 1 | 4320 | < th | dose dependent | rect. | 2 | 3 |
| 660 | 179.14 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 712 | 179.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 732 | 179.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 781 | 179.57 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 789 | 179.63 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 11 | NA |
| 791 | 179.64 | atmosphere | 1000 | 1440 | < th | dose dependent | sin | 7 | NA |
| 820 | 179.71 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 21 | 16 |
| 916 | 180.01 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 985 | 180.18 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 10 | NA |