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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0327200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.05) R2 : 0.575
β1 : 2.17 (0.237) R2dD : 0.192 R2D : -0.00292
β2 : 2.3 (0.107) R2dC : 0.43 R2C : 0.407
β3 : -1.3 (0.209) R2dE : 0.0649 R2E : 0.0505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.82 (0.762) R2dD*E : 0.169 R2D*E : -0.223
γ1 : 0.399 (0.108) R2dN8 : 0.0243 R2N8 : -0.0109
σ : 0.781
deviance : 281.02
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_____
C
peak time of C : 19.6
E
wheather : temperature
threshold : 26.3
memory length : 3578
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.65 0.766 3.55 2.13 2.34 -1.31 2.57 -5.48 0.379 19.7 26.41 4122 -- --
293.95 0.799 3.74 0.991 2.34 -0.823 2.54 -- 0.114 19.7 72.35 2968 -- --
281.02 0.781 3.55 2.17 2.3 -1.3 -- -5.82 0.399 19.6 26.3 3578 -- --
312.12 0.823 3.74 0.937 2.35 -0.814 -- -- 0.117 19.6 148 2807 -- --
465.02 1 3.62 1.89 -- -2.47 -- -6.95 0.207 -- 72.46 577 -- --
307.22 0.822 3.7 1.34 2.33 -- 2.55 -- 0.284 19.8 -- -- -- --
325.83 0.845 3.7 1.27 2.33 -- -- -- 0.288 19.7 -- -- -- --
495.69 1.04 3.74 0.599 -- -2.84 -- -- -0.157 -- 36.04 537 -- --
316.5 0.829 3.81 -- 2.33 -1.16 -- -- -0.2 19.7 181.9 47520 -- --
619.65 1.16 3.64 1.24 -- -- -- -- 0.254 -- -- -- -- --
368.45 0.898 3.73 -- 2.32 -- -- -- 0.146 19.7 -- -- -- --
504.33 1.05 3.76 -- -- -3.05 -- -- -0.25 -- 45.66 546 -- --
660.3 1.2 3.68 -- -- -- -- -- 0.116 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 260.30 atmosphere 1000 270 > th dose independent rect. 21 15
2 260.40 temperature 15 90 > th dose dependent rect. 13 20
4 261.27 atmosphere 1015 10 < th dose dependent rect. 3 7
5 262.29 temperature 15 10 > th dose dependent rect. 13 21
20 263.83 atmosphere 1000 10 > th dose independent rect. 21 17
21 263.84 temperature 10 270 > th dose dependent rect. 11 21
43 265.10 temperature 25 4320 < th dose independent rect. 23 3
50 265.26 temperature 25 4320 < th dose independent rect. 22 6
55 265.41 temperature 25 4320 < th dose dependent rect. 10 18
59 265.51 temperature 25 4320 > th dose independent rect. 22 4
71 265.72 temperature 15 90 > th dose dependent rect. 13 10
78 265.76 temperature 25 4320 > th dose independent rect. 23 2
84 265.81 temperature 25 4320 < th dose dependent rect. 15 12
91 265.89 temperature 25 4320 < th dose dependent sin 16 NA
119 266.09 wind 7 270 < th dose independent rect. 11 21
121 266.09 temperature 30 4320 < th dose dependent rect. 20 7
128 266.14 temperature 10 4320 > th dose dependent rect. 20 7
174 266.35 temperature 10 4320 > th dose dependent rect. 24 1
189 266.39 temperature 25 4320 < th dose dependent rect. 17 23
193 266.40 temperature 25 4320 < th dose dependent rect. 17 21
202 266.42 temperature 25 4320 < th dose dependent rect. 15 23
207 266.44 temperature 30 4320 < th dose dependent rect. 24 1
212 266.45 temperature 25 4320 < th dose dependent no NA NA
218 266.46 temperature 25 4320 < th dose dependent rect. 24 23
230 266.49 temperature 25 4320 < th dose dependent rect. 20 23
394 266.84 temperature 25 4320 < th dose dependent rect. 21 1
405 266.87 temperature 10 4320 > th dose dependent sin 12 NA
559 267.14 temperature 10 4320 > th dose dependent rect. 20 16
706 267.37 temperature 15 30 > th dose dependent rect. 13 8
756 267.45 temperature 10 4320 > th dose dependent rect. 11 19
895 267.66 temperature 30 270 < th dose independent rect. 8 3