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Os09g0327200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
265.65 | 0.766 | 3.55 | 2.13 | 2.34 | -1.31 | 2.57 | -5.48 | 0.379 | 19.7 | 26.41 | 4122 | -- | -- |
293.95 | 0.799 | 3.74 | 0.991 | 2.34 | -0.823 | 2.54 | -- | 0.114 | 19.7 | 72.35 | 2968 | -- | -- |
281.02 | 0.781 | 3.55 | 2.17 | 2.3 | -1.3 | -- | -5.82 | 0.399 | 19.6 | 26.3 | 3578 | -- | -- |
312.12 | 0.823 | 3.74 | 0.937 | 2.35 | -0.814 | -- | -- | 0.117 | 19.6 | 148 | 2807 | -- | -- |
465.02 | 1 | 3.62 | 1.89 | -- | -2.47 | -- | -6.95 | 0.207 | -- | 72.46 | 577 | -- | -- |
307.22 | 0.822 | 3.7 | 1.34 | 2.33 | -- | 2.55 | -- | 0.284 | 19.8 | -- | -- | -- | -- |
325.83 | 0.845 | 3.7 | 1.27 | 2.33 | -- | -- | -- | 0.288 | 19.7 | -- | -- | -- | -- |
495.69 | 1.04 | 3.74 | 0.599 | -- | -2.84 | -- | -- | -0.157 | -- | 36.04 | 537 | -- | -- |
316.5 | 0.829 | 3.81 | -- | 2.33 | -1.16 | -- | -- | -0.2 | 19.7 | 181.9 | 47520 | -- | -- |
619.65 | 1.16 | 3.64 | 1.24 | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
368.45 | 0.898 | 3.73 | -- | 2.32 | -- | -- | -- | 0.146 | 19.7 | -- | -- | -- | -- |
504.33 | 1.05 | 3.76 | -- | -- | -3.05 | -- | -- | -0.25 | -- | 45.66 | 546 | -- | -- |
660.3 | 1.2 | 3.68 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
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1 | 260.30 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 21 | 15 |
2 | 260.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 20 |
4 | 261.27 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 3 | 7 |
5 | 262.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 21 |
20 | 263.83 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 21 | 17 |
21 | 263.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 21 |
43 | 265.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
50 | 265.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
55 | 265.41 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 18 |
59 | 265.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
71 | 265.72 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 10 |
78 | 265.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
84 | 265.81 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 12 |
91 | 265.89 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
119 | 266.09 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 21 |
121 | 266.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 7 |
128 | 266.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 7 |
174 | 266.35 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
189 | 266.39 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
193 | 266.40 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 21 |
202 | 266.42 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
207 | 266.44 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
212 | 266.45 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
218 | 266.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 23 |
230 | 266.49 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 23 |
394 | 266.84 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
405 | 266.87 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |
559 | 267.14 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 16 |
706 | 267.37 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 8 |
756 | 267.45 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 19 |
895 | 267.66 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 3 |