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Os09g0325700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein phpsphatase 2C (PP2C) (EC 3.1.3.16).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0702) R2 : 0.654
β1 : 2.26 (0.215) R2dD : 0.12 R2D : 0.0328
β2 : 1.67 (0.129) R2dC : 0.128 R2C : -0.0231
β3 : -18 (1.53) R2dE : 2.53 R2E : -1.06
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -40.4 (4.11) R2dD*E : 1.74 R2D*E : -2.76
γ1 : 0.935 (0.111) R2dN8 : 0.074 R2N8 : -0.0757
σ : 0.949
deviance : 415.09
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C
peak time of C : 8.36
E
wheather : radiation
threshold : 0.8024
memory length : 925
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.92
open length of G : 7.95

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
415.71 0.958 10.9 2.37 1.65 -17.8 -0.657 -40 0.915 8.38 0.8598 926 8.92 7.92
559.71 1.11 11.3 3.66 1.78 -3.11 -0.973 -- 1.05 8.93 0.8598 926 8.92 7.92
415.09 0.949 10.9 2.26 1.67 -18 -- -40.4 0.935 8.36 0.8024 925 8.92 7.95
468.53 1.01 11.4 3.33 1.5 -3.56 -- -- 0.79 7.81 2.3 845 9.4 8.78
547.88 1.09 11 2.39 -- -18.7 -- -39.5 0.928 -- 0.6256 773 8.82 8.32
591.64 1.14 11.3 3.83 1.81 -- -1.03 -- 1.1 8.67 -- -- -- --
595.14 1.14 11.3 3.8 1.82 -- -- -- 1.1 8.64 -- -- -- --
538.13 1.08 11.4 3.69 -- -4.08 -- -- 0.853 -- 4.29 582 9.4 9.42
694.67 1.23 11.3 -- 1.83 -5.17 -- -- 0.73 7.43 0.1561 926 10.1 8.03
781.05 1.31 11.4 3.8 -- -- -- -- 1.11 -- -- -- -- --
975.57 1.46 11.4 -- 1.83 -- -- -- 0.674 8.49 -- -- -- --
792.33 1.31 11.5 -- -- -6.53 -- -- 0.259 -- 0.1874 813 12.8 5.32
1162.81 1.59 11.5 -- -- -- -- -- 0.691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 452.69 radiation 1 720 < th dose dependent rect. 9 8
7 458.61 humidity 80 720 < th dose independent rect. 11 11
9 459.72 humidity 80 720 < th dose independent rect. 15 6
18 461.93 humidity 80 720 < th dose independent sin 18 NA
34 466.90 humidity 80 720 > th dose independent rect. 11 11
41 467.87 humidity 80 720 > th dose independent rect. 6 16
42 467.92 humidity 90 720 < th dose dependent rect. 18 3
45 468.74 radiation 1 720 > th dose independent rect. 9 21
49 469.09 humidity 90 720 < th dose dependent rect. 18 6
71 471.23 radiation 1 720 > th dose independent rect. 9 10
90 471.95 humidity 90 720 < th dose dependent sin 14 NA
102 472.53 humidity 80 720 > th dose independent sin 20 NA
109 473.09 humidity 80 720 > th dose independent rect. 1 21
116 473.36 humidity 80 720 > th dose independent rect. 11 21
118 473.49 humidity 90 720 < th dose dependent rect. 16 14
127 473.87 humidity 90 4320 > th dose independent rect. 6 1
137 474.41 radiation 1 720 < th dose independent rect. 11 14
142 474.72 radiation 1 720 < th dose independent rect. 11 7
153 475.05 humidity 70 720 > th dose dependent rect. 11 12
154 475.13 radiation 1 720 < th dose independent rect. 13 12
155 475.16 radiation 1 720 < th dose independent rect. 13 5
167 475.61 humidity 50 14400 > th dose dependent rect. 3 4
174 475.93 humidity 60 720 > th dose dependent rect. 15 8
176 475.96 humidity 80 720 < th dose independent rect. 6 16
191 476.44 humidity 60 720 > th dose dependent rect. 17 6
219 477.25 humidity 80 720 < th dose independent rect. 11 21
223 477.46 humidity 70 720 > th dose dependent sin 18 NA
231 477.68 humidity 80 720 > th dose independent rect. 11 16
317 479.75 humidity 50 14400 > th dose dependent rect. 4 2
328 479.86 radiation 1 1440 > th dose independent rect. 4 1
338 479.86 radiation 1 1440 > th dose dependent rect. 4 1
350 479.94 humidity 90 4320 < th dose independent rect. 6 1
358 480.06 humidity 80 720 > th dose independent rect. 5 22
368 480.37 radiation 1 720 < th dose dependent rect. 11 15
449 481.72 humidity 60 14400 > th dose independent rect. 3 5
454 481.80 radiation 1 720 > th dose independent sin 18 NA
464 482.00 radiation 1 720 < th dose independent sin 19 NA
469 482.05 humidity 70 720 > th dose independent sin 12 NA
507 482.64 humidity 70 720 > th dose dependent rect. 19 1
523 482.93 humidity 70 720 > th dose dependent rect. 6 17
550 483.33 humidity 80 720 > th dose independent no NA NA
630 484.53 radiation 1 720 < th dose independent rect. 14 1
638 484.64 radiation 1 720 < th dose independent rect. 9 6
657 485.08 radiation 1 1440 < th dose independent rect. 9 3
658 485.08 radiation 1 1440 < th dose dependent rect. 9 3
739 486.25 humidity 80 1440 < th dose independent rect. 6 9
751 486.37 humidity 50 14400 > th dose dependent rect. 20 1
755 486.42 humidity 80 720 > th dose independent rect. 15 23
787 486.92 humidity 80 1440 < th dose independent rect. 2 13
802 487.17 humidity 80 720 > th dose independent rect. 21 23
810 487.28 radiation 10 4320 < th dose dependent rect. 3 2
840 487.59 humidity 80 720 < th dose independent no NA NA
854 487.76 humidity 60 14400 > th dose independent rect. 1 7
900 488.32 radiation 1 720 < th dose dependent sin 19 NA
968 489.31 humidity 70 720 < th dose independent sin 12 NA
977 489.40 humidity 70 720 > th dose dependent rect. 11 20