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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0324400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0218) R2 : 0.000163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0125 (0.0458) R2dN8 : 0.000211 R2N8 : 0.000163
σ : 0.41
deviance : 77.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.15 0.405 3 0.257 0.0523 0.164 0.152 0.768 0.0267 20.4 40.22 4271 -- --
74.91 0.403 3.01 0.192 0.0472 0.224 0.228 -- 0.00637 20.3 40.22 4110 -- --
74.22 0.401 3 0.253 0.0528 0.166 -- 0.772 0.0271 19.9 40.22 4269 -- --
74.97 0.403 3.01 0.168 0.043 0.214 -- -- 0.00773 19.8 40.23 4113 -- --
74.37 0.402 3 0.253 -- 0.163 -- 0.774 0.0272 -- 40.23 4254 -- --
76.18 0.409 3 0.174 0.055 -- 0.167 -- 0.0315 21.3 -- -- -- --
76.28 0.409 3 0.168 0.0549 -- -- -- 0.0315 21 -- -- -- --
75.05 0.403 3.01 0.159 -- 0.219 -- -- 0.00676 -- 40.23 4110 -- --
75.66 0.405 3.01 -- 0.0394 0.204 -- -- 0.00389 19.7 40.23 4109 -- --
76.45 0.409 3 0.168 -- -- -- -- 0.0311 -- -- -- -- --
77.02 0.411 3.01 -- 0.0548 -- -- -- 0.0128 21.2 -- -- -- --
75.72 0.405 3.01 -- -- 0.217 -- -- -0.0124 -- 40.23 4095 -- --
77.2 0.41 3.01 -- -- -- -- -- 0.0125 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.85 wind 1.0 30 < th dose dependent rect. 15 8
5 65.83 wind 1.0 30 < th dose independent rect. 15 8
6 65.86 wind 1.0 30 < th dose independent rect. 21 1
15 65.90 wind 1.0 10 < th dose dependent rect. 21 1
108 69.68 wind 1.0 90 < th dose dependent rect. 11 11
126 70.99 atmosphere 1005.0 30 > th dose independent rect. 21 1
164 71.90 atmosphere 1005.0 30 > th dose dependent rect. 21 1
168 71.97 temperature 25.0 270 > th dose independent rect. 4 3
174 72.01 wind 1.0 270 < th dose dependent rect. 18 1
193 72.23 wind 1.0 90 < th dose independent rect. 11 11
251 72.63 temperature 25.0 90 > th dose dependent rect. 6 1
276 72.89 atmosphere 995.0 10 > th dose independent rect. 22 23
284 72.93 temperature 25.0 90 > th dose dependent rect. 1 6
296 73.02 wind 1.0 10 < th dose independent rect. 7 15
329 73.11 radiation 30.0 4320 > th dose independent rect. 14 1
339 73.13 radiation 30.0 4320 < th dose independent rect. 14 1
357 73.21 temperature 25.0 10 > th dose dependent rect. 1 7
358 73.23 temperature 20.0 10 > th dose independent rect. 21 1
360 73.24 precipitation 0.1 90 > th dose dependent rect. 15 2
367 73.27 temperature 20.0 30 > th dose independent rect. 6 16
368 73.28 precipitation 0.1 90 > th dose independent rect. 15 2
370 73.29 humidity 90.0 90 < th dose independent rect. 20 1
390 73.37 atmosphere 1000.0 30 > th dose independent rect. 22 8
405 73.44 precipitation 0.1 30 < th dose independent rect. 6 16
406 73.44 precipitation 0.1 30 < th dose dependent rect. 6 16
407 73.45 wind 9.0 30 < th dose dependent rect. 6 16
411 73.47 radiation 10.0 43200 < th dose dependent rect. 21 3
417 73.50 temperature 25.0 10 > th dose dependent rect. 6 2
435 73.55 temperature 25.0 90 < th dose independent rect. 23 10
452 73.58 radiation 1.0 1440 < th dose dependent rect. 21 2
459 73.60 precipitation 0.1 10 < th dose independent rect. 21 1
460 73.60 radiation 10.0 4320 > th dose dependent rect. 14 1
461 73.60 precipitation 0.1 10 < th dose dependent rect. 21 1
464 73.61 temperature 10.0 1440 > th dose independent rect. 23 8
467 73.61 temperature 30.0 1440 < th dose independent rect. 23 8
471 73.61 humidity 50.0 1440 > th dose independent rect. 23 8
476 73.61 atmosphere 995.0 1440 > th dose independent rect. 23 8
477 73.61 radiation 40.0 1440 < th dose independent rect. 23 8
481 73.61 temperature 10.0 1440 > th dose independent rect. 7 16
488 73.62 temperature 25.0 720 < th dose independent rect. 22 6
489 73.63 temperature 25.0 720 > th dose independent rect. 23 3
491 73.63 radiation 40.0 4320 < th dose dependent rect. 14 1
497 73.64 humidity 50.0 30 > th dose dependent rect. 22 8
504 73.66 temperature 25.0 720 > th dose independent rect. 23 8
506 73.66 radiation 10.0 30 < th dose independent rect. 22 8
519 73.68 wind 9.0 30 < th dose independent rect. 22 8
520 73.68 temperature 10.0 30 > th dose independent rect. 22 8
521 73.68 temperature 30.0 30 < th dose independent rect. 22 8
522 73.68 humidity 50.0 30 > th dose independent rect. 22 8
530 73.68 temperature 10.0 30 > th dose independent rect. 6 16
532 73.68 atmosphere 1015.0 30 < th dose independent rect. 6 16
534 73.69 radiation 40.0 4320 > th dose independent rect. 11 1
541 73.69 wind 9.0 30 < th dose independent rect. 6 16
544 73.70 radiation 40.0 4320 < th dose independent rect. 11 1
547 73.70 radiation 40.0 30 < th dose dependent rect. 22 8
550 73.71 temperature 25.0 90 < th dose independent rect. 20 2
554 73.71 temperature 30.0 14400 > th dose dependent rect. 8 1
570 73.71 radiation 30.0 30 < th dose dependent rect. 22 23
571 73.72 temperature 25.0 720 > th dose independent rect. 1 1
574 73.72 atmosphere 995.0 30 > th dose independent rect. 7 23
577 73.72 temperature 25.0 10 > th dose dependent rect. 21 11
584 73.74 wind 9.0 1440 < th dose independent rect. 23 8
597 73.76 humidity 80.0 90 > th dose independent rect. 20 1
599 73.76 precipitation 0.1 90 > th dose independent rect. 14 5
616 73.78 humidity 60.0 30 > th dose dependent rect. 21 1
620 73.79 humidity 80.0 10 > th dose independent rect. 21 1
624 73.79 precipitation 0.1 90 > th dose independent rect. 14 7
630 73.80 wind 1.0 90 < th dose dependent sin 19 NA
666 73.83 temperature 30.0 14400 > th dose independent rect. 8 1
736 73.87 wind 9.0 1440 < th dose independent rect. 21 2
741 73.87 radiation 30.0 4320 < th dose independent rect. 14 6
746 73.87 radiation 30.0 4320 < th dose independent rect. 14 16
778 73.89 radiation 30.0 4320 > th dose independent rect. 10 7
803 73.90 temperature 30.0 30 < th dose dependent rect. 21 1
807 73.90 radiation 40.0 4320 < th dose dependent rect. 10 2
813 73.91 wind 1.0 14400 < th dose dependent rect. 2 1
821 73.92 temperature 30.0 14400 < th dose independent rect. 4 5
828 73.92 temperature 30.0 14400 < th dose independent rect. 1 8
831 73.92 atmosphere 995.0 90 > th dose independent rect. 11 9
834 73.92 temperature 30.0 14400 < th dose independent rect. 23 10
848 73.92 wind 9.0 10 < th dose independent rect. 22 23
850 73.92 atmosphere 995.0 90 > th dose dependent rect. 23 21
856 73.93 radiation 20.0 4320 > th dose dependent rect. 11 1
863 73.94 radiation 30.0 4320 > th dose independent sin 16 NA
866 73.94 temperature 10.0 10 > th dose independent rect. 21 1
868 73.94 temperature 30.0 14400 < th dose independent rect. 8 1
869 73.94 temperature 30.0 10 < th dose independent rect. 21 1
871 73.94 humidity 50.0 10 > th dose independent rect. 21 1
875 73.94 atmosphere 1010.0 10 < th dose independent rect. 21 1
877 73.94 radiation 1.0 10 < th dose independent rect. 21 1
893 73.94 temperature 30.0 14400 < th dose independent rect. 20 13
904 73.94 temperature 10.0 10 > th dose independent rect. 22 23
905 73.94 radiation 1.0 10 < th dose dependent rect. 21 1
999 73.96 temperature 10.0 1440 > th dose independent rect. 22 1