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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0324300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.73 (0.0342) R2 : 0.0302
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0721) R2dN8 : 0.039 R2N8 : 0.0302
σ : 0.645
deviance : 190.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.9 0.621 2.68 0.11 0.0433 0.0607 0.582 3.67 0.314 14 0.5235 365 -- --
184.09 0.632 2.71 0.0344 0.0412 0.597 0.592 -- 0.347 13.2 0.5995 364 -- --
176.12 0.618 2.67 0.136 0.0553 0.0793 -- 3.68 0.318 16.1 0.5 364 -- --
185.35 0.634 2.71 0.0283 0.0831 0.597 -- -- 0.332 16.2 1.434e-06 364 -- --
176.29 0.618 2.67 0.135 -- 0.0777 -- 3.64 0.321 -- 0.4841 364 -- --
187.02 0.641 2.72 0.125 0.0776 -- 0.845 -- 0.287 9.95 -- -- -- --
189.81 0.645 2.72 0.158 0.0736 -- -- -- 0.289 9.98 -- -- -- --
185.72 0.635 2.71 0.0536 -- 0.576 -- -- 0.33 -- 0.06825 364 -- --
185.38 0.634 2.72 -- 0.0912 0.64 -- -- 0.328 16.7 2.611e-05 364 -- --
190.13 0.644 2.72 0.157 -- -- -- -- 0.289 -- -- -- -- --
190.46 0.646 2.72 -- 0.073 -- -- -- 0.272 9.82 -- -- -- --
185.8 0.635 2.71 -- -- 0.594 -- -- 0.326 -- 0.004627 364 -- --
190.78 0.645 2.73 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.09 wind 1 10 < th dose independent rect. 8 1
3 165.09 wind 1 10 < th dose dependent rect. 8 1
6 171.76 wind 1 270 < th dose dependent rect. 4 5
7 171.80 wind 1 270 < th dose independent rect. 6 2
9 172.21 wind 1 270 < th dose dependent rect. 6 2
12 172.91 wind 1 90 < th dose independent rect. 6 4
27 174.35 atmosphere 1005 10 > th dose dependent rect. 7 1
29 174.46 wind 1 270 < th dose dependent rect. 4 13
33 174.49 wind 1 270 < th dose dependent rect. 4 16
51 175.29 wind 1 270 < th dose dependent sin 4 NA
55 175.41 wind 1 270 < th dose independent rect. 4 5
58 175.49 temperature 20 1440 > th dose independent rect. 12 1
74 175.78 temperature 20 1440 < th dose dependent rect. 12 2
83 175.92 temperature 20 1440 < th dose independent rect. 12 1
84 175.97 wind 1 720 < th dose dependent rect. 4 1
132 177.14 wind 1 1440 < th dose independent rect. 20 1
135 177.19 temperature 20 1440 < th dose dependent rect. 11 9
142 177.23 temperature 20 1440 < th dose dependent rect. 9 11
155 177.34 humidity 90 1440 < th dose independent rect. 11 2
164 177.48 wind 1 43200 < th dose dependent rect. 6 1
172 177.55 wind 1 270 < th dose dependent rect. 6 11
188 177.66 wind 1 43200 < th dose independent rect. 6 1
195 177.71 humidity 90 90 > th dose dependent rect. 6 1
217 177.87 wind 1 1440 > th dose independent rect. 20 1
218 177.87 wind 1 720 < th dose dependent rect. 6 17
219 177.89 humidity 90 1440 > th dose dependent rect. 11 2
221 177.90 temperature 20 1440 < th dose dependent sin 21 NA
229 177.97 humidity 90 1440 > th dose independent rect. 11 2
247 178.08 humidity 50 1440 < th dose dependent rect. 11 3
277 178.18 humidity 80 10 > th dose independent rect. 7 1
284 178.21 wind 3 10 < th dose dependent rect. 7 5
286 178.22 wind 1 43200 > th dose independent rect. 6 1
294 178.27 temperature 15 1440 > th dose independent rect. 4 12
347 178.55 wind 5 4320 < th dose independent rect. 24 4
352 178.58 wind 5 4320 > th dose independent rect. 24 4
377 178.69 temperature 15 1440 > th dose independent rect. 23 1
383 178.72 humidity 50 1440 < th dose dependent rect. 15 2
385 178.73 temperature 20 1440 < th dose dependent rect. 17 1
392 178.75 wind 1 270 < th dose dependent rect. 14 19
409 178.83 wind 5 4320 > th dose dependent rect. 22 6
415 178.86 wind 5 4320 > th dose independent rect. 1 2
416 178.86 temperature 20 720 > th dose independent rect. 2 4
437 178.92 wind 3 1440 < th dose independent rect. 16 1
447 178.97 temperature 20 720 > th dose independent rect. 2 2
463 179.01 wind 1 14400 < th dose dependent rect. 6 16
467 179.03 wind 1 4320 < th dose dependent rect. 21 1
473 179.06 wind 3 10 < th dose dependent rect. 7 12
478 179.09 temperature 20 720 > th dose independent rect. 2 10
489 179.14 wind 3 1440 > th dose independent rect. 16 1
499 179.18 wind 1 14400 > th dose independent rect. 6 16
500 179.18 wind 1 14400 < th dose independent rect. 6 16
529 179.25 wind 5 4320 > th dose dependent rect. 1 1
537 179.28 humidity 50 1440 < th dose independent rect. 15 2
539 179.29 humidity 50 1440 < th dose independent rect. 12 2
540 179.29 humidity 50 1440 < th dose independent rect. 13 4
542 179.30 humidity 50 1440 < th dose independent rect. 10 4
567 179.32 wind 1 14400 > th dose independent rect. 6 18
584 179.35 humidity 50 1440 > th dose independent rect. 13 4
585 179.35 wind 1 14400 < th dose independent rect. 6 18
590 179.36 wind 1 14400 < th dose dependent sin 22 NA
605 179.39 humidity 90 720 > th dose dependent rect. 6 1
612 179.40 temperature 15 720 > th dose independent rect. 11 7
634 179.45 wind 1 270 < th dose dependent rect. 6 23
652 179.49 wind 1 14400 > th dose independent sin 21 NA
653 179.49 wind 1 270 < th dose independent sin 4 NA
655 179.49 humidity 50 1440 > th dose independent rect. 14 1
666 179.51 wind 1 43200 > th dose independent rect. 12 20
671 179.52 wind 1 14400 < th dose independent sin 21 NA
673 179.52 wind 1 43200 > th dose independent rect. 13 18
683 179.54 wind 1 14400 > th dose independent rect. 14 12
693 179.55 temperature 30 720 < th dose dependent rect. 5 3
710 179.58 wind 1 14400 > th dose independent rect. 6 21
713 179.58 wind 1 14400 < th dose dependent rect. 6 13
725 179.59 wind 1 14400 > th dose independent rect. 12 15
734 179.60 wind 1 14400 < th dose dependent rect. 4 21
735 179.61 wind 1 14400 > th dose independent sin 16 NA
747 179.62 wind 1 43200 < th dose independent rect. 12 19
751 179.63 wind 1 14400 > th dose independent rect. 10 17
755 179.64 temperature 15 720 > th dose independent rect. 20 5
759 179.64 wind 1 43200 < th dose dependent rect. 2 22
762 179.65 wind 1 43200 > th dose independent rect. 15 16
790 179.69 wind 1 270 < th dose independent rect. 4 14
814 179.72 wind 1 270 < th dose independent rect. 4 1
815 179.72 wind 1 270 > th dose independent rect. 1 12
829 179.74 wind 1 14400 < th dose independent rect. 15 1
839 179.75 temperature 15 270 > th dose independent rect. 13 12
841 179.75 humidity 50 43200 > th dose dependent rect. 5 2
847 179.76 wind 1 43200 < th dose independent rect. 20 2
855 179.76 wind 1 14400 < th dose independent rect. 14 12
857 179.76 temperature 20 720 < th dose independent rect. 5 13
872 179.76 wind 1 43200 < th dose dependent rect. 4 12
894 179.78 wind 1 14400 < th dose dependent rect. 7 22
896 179.79 humidity 50 1440 > th dose independent rect. 12 13
902 179.79 wind 3 14400 < th dose dependent rect. 13 14
914 179.80 humidity 50 1440 > th dose independent rect. 12 20
915 179.80 wind 1 14400 < th dose dependent sin 17 NA
920 179.81 wind 5 43200 > th dose independent rect. 23 3
927 179.81 humidity 50 1440 > th dose independent rect. 12 16
928 179.81 humidity 50 1440 > th dose independent rect. 12 18
955 179.82 wind 5 43200 < th dose independent rect. 24 2
970 179.83 wind 1 1440 > th dose independent rect. 6 1