Os09g0322600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Polygalacturonase inhibitory protein.
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Os09g0322600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Polygalacturonase inhibitory protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.9 | 0.443 | 4.57 | -0.213 | 1.38 | -1.82 | 0.957 | -1.05 | 0.485 | 2.06 | 21.6 | 261 | -- | -- |
| 89.52 | 0.441 | 4.59 | -0.273 | 1.37 | -1.48 | 0.873 | -- | 0.469 | 2.03 | 21.96 | 275 | -- | -- |
| 92.05 | 0.447 | 4.58 | -0.277 | 1.37 | -1.72 | -- | -0.527 | 0.474 | 2.15 | 21.61 | 271 | -- | -- |
| 92.15 | 0.447 | 4.59 | -0.303 | 1.37 | -1.54 | -- | -- | 0.465 | 2.15 | 21.8 | 272 | -- | -- |
| 180.01 | 0.625 | 4.62 | -0.368 | -- | -1.37 | -- | 0.0799 | 0.342 | -- | 26.56 | 1001 | -- | -- |
| 109.68 | 0.491 | 4.55 | 0.0479 | 1.26 | -- | 0.928 | -- | 0.632 | 1.91 | -- | -- | -- | -- |
| 112.93 | 0.498 | 4.55 | 0.0189 | 1.27 | -- | -- | -- | 0.626 | 2.02 | -- | -- | -- | -- |
| 180 | 0.625 | 4.61 | -0.336 | -- | -1.37 | -- | -- | 0.346 | -- | 26.62 | 994 | -- | -- |
| 94.28 | 0.452 | 4.58 | -- | 1.36 | -1.36 | -- | -- | 0.512 | 2.13 | 21.86 | 266 | -- | -- |
| 209.7 | 0.677 | 4.54 | 0.0716 | -- | -- | -- | -- | 0.656 | -- | -- | -- | -- | -- |
| 112.93 | 0.497 | 4.55 | -- | 1.27 | -- | -- | -- | 0.624 | 2.02 | -- | -- | -- | -- |
| 182.57 | 0.629 | 4.6 | -- | -- | -1.22 | -- | -- | 0.412 | -- | 26.6 | 989 | -- | -- |
| 209.83 | 0.676 | 4.54 | -- | -- | -- | -- | -- | 0.648 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.43 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 16 |
| 2 | 88.43 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 20 |
| 8 | 88.53 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 9 | 88.54 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 14 | 88.66 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 16 |
| 19 | 88.86 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 32 | 89.04 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 44 | 89.22 | temperature | 20 | 720 | > th | dose independent | sin | 19 | NA |
| 62 | 89.47 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 66 | 89.57 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 69 | 89.58 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 70 | 89.58 | temperature | 20 | 270 | < th | dose dependent | sin | 12 | NA |
| 71 | 89.59 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 10 |
| 88 | 89.71 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 89 | 89.71 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 9 |
| 98 | 89.76 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 100 | 89.77 | temperature | 20 | 270 | < th | dose independent | sin | 13 | NA |
| 112 | 89.82 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 113 | 89.83 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 124 | 89.88 | temperature | 20 | 720 | < th | dose independent | sin | 19 | NA |
| 161 | 90.13 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 23 |
| 166 | 90.17 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 174 | 90.23 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 18 |
| 217 | 90.45 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 15 |
| 239 | 90.53 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 308 | 90.77 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 15 |
| 344 | 90.89 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 356 | 90.94 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 23 |
| 415 | 91.16 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 428 | 91.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 444 | 91.29 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 455 | 91.33 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 461 | 91.34 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 13 |
| 478 | 91.39 | temperature | 20 | 30 | < th | dose dependent | sin | 9 | NA |
| 490 | 91.46 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 507 | 91.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 520 | 91.60 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 547 | 91.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 581 | 91.78 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 589 | 91.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 646 | 91.90 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 706 | 92.08 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 714 | 92.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 717 | 92.11 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 718 | 92.11 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 734 | 92.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 764 | 92.21 | humidity | 90 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 798 | 92.28 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 809 | 92.32 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 821 | 92.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 12 |
| 858 | 92.47 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 905 | 92.57 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 923 | 92.62 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 4 |