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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0322500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0433) R2 : 0.468
β1 : -0.402 (0.178) R2dD : 0.0106 R2D : -0.0388
β2 : 1.29 (0.0935) R2dC : 0.229 R2C : 0.164
β3 : 5.73 (0.376) R2dE : 0.818 R2E : -0.279
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 13.4 (1.2) R2dD*E : 0.596 R2D*E : -0.612
γ1 : 0.0816 (0.0878) R2dN8 : 0.00107 R2N8 : -0.0354
σ : 0.725
deviance : 242.53
__
_____
C
peak time of C : 1.48
E
wheather : radiation
threshold : 0.9399
memory length : 1435
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 22.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.32 0.728 3.84 -0.479 1.14 5.74 -1.14 13.5 0.0636 1.79 0.9751 1446 18 23
288.54 0.791 3.64 0.403 1.13 2.42 -0.858 -- 0.322 1.7 2.806 1453 17.1 24
242.53 0.725 3.85 -0.402 1.29 5.73 -- 13.4 0.0816 1.48 0.9399 1435 18.1 22.9
290.84 0.794 3.64 0.462 1.13 2.46 -- -- 0.35 1.46 2.709 1449 19.4 24
294.43 0.799 3.85 -0.268 -- 5.81 -- 13.4 0.0612 -- 0.8723 1487 18 23
364.94 0.896 3.7 -0.0545 1.19 -- -1.08 -- -0.0236 1.51 -- -- -- --
369.37 0.9 3.7 -0.0174 1.19 -- -- -- -0.0165 1.3 -- -- -- --
291.98 0.796 3.61 0.438 -- 3.19 -- -- 0.376 -- 2.68 1641 18 24
296.01 0.801 3.63 -- 1.13 2.35 -- -- 0.332 1.5 2.8 1449 16.3 24
456.18 0.998 3.68 0.0289 -- -- -- -- 0.00808 -- -- -- -- --
369.38 0.899 3.7 -- 1.19 -- -- -- -0.0145 1.3 -- -- -- --
296.62 0.802 3.62 -- -- 3.07 -- -- 0.295 -- 2.79 1646 15.9 24
456.21 0.997 3.68 -- -- -- -- -- 0.00488 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 240.87 radiation 1 1440 < th dose dependent rect. 18 23
2 247.92 temperature 25 14400 > th dose dependent rect. 15 1
3 247.96 radiation 1 1440 < th dose dependent rect. 5 12
4 248.10 temperature 25 14400 > th dose dependent rect. 14 3
6 248.20 temperature 25 14400 > th dose dependent rect. 12 1
7 248.23 temperature 25 14400 > th dose dependent rect. 11 7
17 248.45 radiation 1 1440 < th dose dependent rect. 20 21
40 249.04 radiation 1 1440 < th dose dependent rect. 2 15
51 249.48 radiation 1 14400 < th dose dependent rect. 19 10
57 249.72 humidity 80 43200 > th dose dependent rect. 10 1
64 249.94 temperature 25 14400 > th dose independent rect. 16 4
65 249.98 temperature 25 14400 > th dose dependent rect. 11 16
74 250.08 temperature 25 14400 > th dose independent rect. 23 21
77 250.16 radiation 1 14400 < th dose dependent rect. 22 7
80 250.18 temperature 25 14400 > th dose independent rect. 1 12
84 250.27 atmosphere 1005 43200 < th dose independent rect. 18 1
107 250.46 temperature 25 14400 > th dose independent rect. 10 19
120 250.56 temperature 25 14400 < th dose independent rect. 16 4
125 250.63 atmosphere 1005 43200 > th dose independent rect. 18 1
127 250.65 temperature 25 14400 > th dose independent rect. 8 22
138 250.77 temperature 25 14400 > th dose dependent sin 19 NA
182 250.95 temperature 25 14400 < th dose independent rect. 24 20
195 251.03 temperature 25 14400 > th dose independent rect. 16 22
198 251.06 temperature 20 14400 > th dose independent rect. 5 1
200 251.07 atmosphere 1005 43200 > th dose independent rect. 16 1
204 251.10 temperature 25 14400 < th dose independent rect. 2 11
252 251.28 temperature 25 14400 > th dose independent rect. 10 23
283 251.42 temperature 25 14400 > th dose independent no NA NA
290 251.44 temperature 25 14400 > th dose independent sin 4 NA
315 251.52 temperature 10 14400 > th dose dependent rect. 12 15
334 251.58 temperature 10 14400 > th dose dependent rect. 11 19
343 251.60 atmosphere 1005 43200 < th dose independent rect. 16 1
358 251.63 temperature 25 14400 > th dose independent rect. 19 23
365 251.64 temperature 25 14400 < th dose independent rect. 10 20
382 251.67 temperature 30 14400 < th dose dependent rect. 12 15
390 251.69 temperature 30 14400 < th dose dependent rect. 11 19
394 251.70 temperature 25 14400 < th dose independent rect. 8 22
429 251.78 temperature 25 14400 > th dose independent rect. 7 5
456 251.83 temperature 25 14400 > th dose dependent rect. 23 20
495 251.88 temperature 25 14400 > th dose independent sin 18 NA
563 251.97 temperature 25 14400 < th dose independent rect. 16 22
596 252.05 temperature 25 14400 < th dose independent rect. 7 5
607 252.06 temperature 20 14400 > th dose independent rect. 24 1
611 252.06 temperature 10 14400 > th dose dependent sin 17 NA
642 252.11 temperature 20 14400 < th dose independent rect. 4 1
653 252.12 temperature 25 14400 > th dose independent rect. 11 10
657 252.12 humidity 80 43200 > th dose dependent rect. 10 4
708 252.20 temperature 25 14400 < th dose independent sin 4 NA
724 252.22 temperature 30 14400 < th dose dependent sin 17 NA
764 252.29 temperature 30 14400 < th dose dependent rect. 15 4
806 252.34 temperature 10 14400 > th dose dependent rect. 24 19
825 252.37 temperature 25 14400 < th dose independent no NA NA
826 252.37 temperature 25 14400 > th dose independent rect. 7 14
850 252.39 temperature 30 14400 < th dose dependent rect. 23 21
864 252.41 temperature 25 14400 > th dose independent rect. 8 1
939 252.48 temperature 25 14400 < th dose independent rect. 3 23
992 252.53 temperature 30 14400 < th dose dependent rect. 12 9