Os09g0322400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0322400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.09 | 0.852 | 4.79 | -0.553 | 1.58 | -2.06 | -1.37 | -3.57 | -0.0315 | 1.76 | 25.1 | 5506 | -- | -- |
| 333.33 | 0.85 | 4.68 | 0.408 | 1.59 | -2.38 | -1.37 | -- | 0.143 | 1.73 | 25.48 | 5482 | -- | -- |
| 335.83 | 0.854 | 4.8 | -0.551 | 1.59 | -2.07 | -- | -3.83 | -0.0437 | 1.51 | 25.09 | 5455 | -- | -- |
| 340.57 | 0.86 | 4.67 | 0.436 | 1.58 | -2.41 | -- | -- | 0.163 | 1.48 | 25.46 | 5439 | -- | -- |
| 473.65 | 1.01 | 4.78 | -0.475 | -- | -2 | -- | -3.65 | -0.049 | -- | 24.92 | 4655 | -- | -- |
| 531.46 | 1.08 | 4.71 | -0.48 | 1.35 | -- | -1.86 | -- | -0.00843 | 1.91 | -- | -- | -- | -- |
| 543.88 | 1.09 | 4.7 | -0.421 | 1.34 | -- | -- | -- | 0.00424 | 1.54 | -- | -- | -- | -- |
| 468.56 | 1.01 | 4.58 | 0.47 | -- | -2.19 | -- | -- | 0.328 | -- | 25.8 | 5992 | -- | -- |
| 345.08 | 0.865 | 4.69 | -- | 1.58 | -2.3 | -- | -- | 0.0917 | 1.49 | 25.7 | 5438 | -- | -- |
| 654.57 | 1.2 | 4.69 | -0.367 | -- | -- | -- | -- | 0.0334 | -- | -- | -- | -- | -- |
| 548.55 | 1.1 | 4.69 | -- | 1.34 | -- | -- | -- | 0.0511 | 1.53 | -- | -- | -- | -- |
| 472.45 | 1.01 | 4.64 | -- | -- | -2.03 | -- | -- | 0.24 | -- | 25.9 | 6020 | -- | -- |
| 658.12 | 1.2 | 4.68 | -- | -- | -- | -- | -- | 0.0742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.53 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 316.49 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 10 | 317.01 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 18 | 317.51 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 20 | 317.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 62 | 318.76 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 65 | 318.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 69 | 318.88 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 96 | 319.20 | temperature | 25 | 14400 | < th | dose independent | sin | 16 | NA |
| 101 | 319.25 | temperature | 25 | 14400 | > th | dose independent | sin | 16 | NA |
| 111 | 319.31 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 159 | 319.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 206 | 319.92 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 207 | 319.93 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 274 | 320.17 | temperature | 10 | 14400 | > th | dose dependent | sin | 15 | NA |
| 307 | 320.27 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 333 | 320.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 406 | 320.54 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 428 | 320.59 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 523 | 320.82 | temperature | 30 | 14400 | < th | dose dependent | rect. | 16 | 11 |
| 532 | 320.83 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 540 | 320.84 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 609 | 321.00 | temperature | 25 | 14400 | > th | dose independent | rect. | 12 | 17 |
| 659 | 321.09 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 660 | 321.09 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 672 | 321.11 | temperature | 25 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 739 | 321.22 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 740 | 321.22 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 759 | 321.24 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 762 | 321.25 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 772 | 321.26 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 825 | 321.39 | temperature | 30 | 14400 | < th | dose dependent | sin | 14 | NA |
| 841 | 321.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 907 | 321.56 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 986 | 321.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 23 | 23 |