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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0322100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0185) R2 : 0.00781
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0737 (0.0389) R2dN8 : 0.0101 R2N8 : 0.00781
σ : 0.348
deviance : 55.65
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.53 0.344 3.02 -0.172 0.0369 0.064 -0.49 -0.862 0.0198 0.413 89.94 4286 -- --
54.25 0.343 3.03 -0.0397 0.0248 0.121 -0.488 -- 0.015 0.258 87.9 5162 -- --
54.41 0.344 3.02 -0.158 0.0308 0.0827 -- -0.872 0.0162 0.0464 89.93 5173 -- --
55.27 0.346 3.03 -0.0206 0.0274 0.123 -- -- 0.0156 22.7 87.53 5162 -- --
54.48 0.344 3.02 -0.152 -- 0.0951 -- -0.863 0.0148 -- 89.87 5173 -- --
54.47 0.346 3.02 -0.063 0.036 -- -0.491 -- 0.0661 0.216 -- -- -- --
55.49 0.349 3.02 -0.0432 0.0425 -- -- -- 0.0689 22.3 -- -- -- --
55.32 0.346 3.03 -0.0162 -- 0.134 -- -- 0.0117 -- 87 5162 -- --
55.28 0.346 3.03 -- 0.0277 0.129 -- -- 0.0147 22.8 87.47 5162 -- --
55.6 0.348 3.02 -0.0425 -- -- -- -- 0.069 -- -- -- -- --
55.54 0.349 3.02 -- 0.0423 -- -- -- 0.0737 22.3 -- -- -- --
55.32 0.346 3.03 -- -- 0.14 -- -- 0.0108 -- 87.28 5162 -- --
55.65 0.348 3.02 -- -- -- -- -- 0.0737 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.04 radiation 20.0 43200 < th dose dependent rect. 21 1
13 44.26 temperature 25.0 30 > th dose independent rect. 20 1
14 44.27 temperature 10.0 1440 > th dose independent rect. 21 1
17 44.27 temperature 30.0 1440 < th dose independent rect. 21 1
21 44.27 humidity 50.0 1440 > th dose independent rect. 21 1
27 44.27 atmosphere 995.0 1440 > th dose independent rect. 21 1
28 44.27 radiation 1.0 1440 < th dose independent rect. 21 1
48 44.27 temperature 10.0 1440 > th dose independent rect. 22 23
54 44.31 humidity 90.0 30 < th dose independent rect. 20 1
55 44.31 temperature 15.0 30 > th dose dependent rect. 20 1
57 44.32 humidity 80.0 30 > th dose independent rect. 20 1
62 44.35 atmosphere 1005.0 30 > th dose dependent rect. 20 1
63 44.36 wind 5.0 30 < th dose independent rect. 20 1
65 44.37 atmosphere 995.0 30 > th dose dependent rect. 20 1
67 44.38 wind 3.0 30 > th dose independent rect. 20 1
71 44.40 temperature 10.0 30 > th dose independent rect. 20 1
73 44.40 temperature 30.0 30 < th dose independent rect. 20 1
74 44.40 humidity 50.0 30 > th dose independent rect. 20 1
77 44.40 atmosphere 995.0 30 > th dose independent rect. 20 1
79 44.40 atmosphere 1010.0 30 < th dose independent rect. 20 1
81 44.40 radiation 1.0 30 < th dose independent rect. 20 1
86 44.40 precipitation 0.1 30 < th dose independent rect. 20 1
87 44.40 temperature 10.0 30 > th dose independent rect. 21 23
88 44.40 radiation 1.0 30 < th dose dependent rect. 20 1
93 44.40 precipitation 0.1 30 < th dose dependent rect. 20 1
94 44.42 humidity 50.0 30 > th dose dependent rect. 20 1
95 44.43 wind 9.0 30 < th dose dependent rect. 20 1
97 44.44 wind 1.0 30 > th dose dependent rect. 20 1
101 44.53 atmosphere 1015.0 30 < th dose dependent rect. 20 1
104 44.65 humidity 90.0 30 < th dose dependent rect. 20 1
112 45.03 temperature 30.0 30 < th dose dependent rect. 20 1
151 45.81 wind 9.0 30 < th dose independent rect. 21 23
156 46.26 atmosphere 995.0 30 > th dose independent rect. 21 23
161 46.66 precipitation 0.1 30 < th dose independent rect. 21 23
162 46.66 precipitation 0.1 30 < th dose dependent rect. 21 23
203 49.05 humidity 50.0 30 > th dose independent rect. 21 23
205 49.10 precipitation 0.1 1440 < th dose independent rect. 21 1
206 49.10 precipitation 0.1 1440 < th dose dependent rect. 21 1
215 49.47 temperature 30.0 30 < th dose independent rect. 21 23
273 50.25 temperature 25.0 10 > th dose dependent rect. 20 9
299 50.58 atmosphere 1015.0 30 < th dose independent rect. 21 23
338 51.25 wind 1.0 30 > th dose independent rect. 21 23
519 52.04 wind 9.0 30 < th dose dependent rect. 21 23
530 52.07 wind 7.0 720 < th dose independent rect. 21 12
534 52.07 temperature 10.0 90 > th dose dependent rect. 19 12
544 52.10 wind 1.0 720 > th dose independent rect. 9 12
580 52.15 precipitation 0.1 720 < th dose independent rect. 21 12
585 52.15 precipitation 0.1 720 < th dose dependent rect. 21 12
643 52.21 temperature 10.0 720 > th dose dependent rect. 19 2
655 52.23 atmosphere 1000.0 720 > th dose independent rect. 21 12
659 52.24 radiation 10.0 30 < th dose dependent rect. 21 23
660 52.25 temperature 10.0 720 > th dose independent rect. 9 12
661 52.25 temperature 10.0 720 > th dose independent rect. 21 12
662 52.25 humidity 50.0 720 > th dose independent rect. 21 12
669 52.28 temperature 30.0 720 < th dose independent rect. 21 12
670 52.28 atmosphere 995.0 720 > th dose independent rect. 9 12
680 52.31 radiation 1.0 270 > th dose independent rect. 17 1
682 52.32 precipitation 0.1 720 < th dose independent rect. 9 12
685 52.32 precipitation 0.1 720 < th dose dependent rect. 9 12
688 52.33 temperature 25.0 10 > th dose independent rect. 20 11
730 52.42 atmosphere 1015.0 720 < th dose independent rect. 9 12
731 52.42 radiation 1.0 30 < th dose independent rect. 21 23
764 52.50 wind 7.0 720 < th dose independent rect. 7 2
774 52.51 radiation 1.0 720 > th dose independent rect. 7 2
778 52.51 wind 3.0 30 > th dose independent rect. 20 9
780 52.51 temperature 25.0 720 > th dose dependent rect. 21 12
801 52.55 humidity 60.0 720 > th dose independent rect. 7 2
802 52.55 humidity 70.0 720 > th dose independent rect. 19 2
803 52.55 precipitation 0.1 720 < th dose independent rect. 7 2
806 52.55 precipitation 0.1 720 < th dose dependent rect. 7 2
808 52.56 wind 1.0 720 > th dose independent rect. 19 2
810 52.56 temperature 10.0 720 > th dose independent rect. 7 2
813 52.56 atmosphere 995.0 720 > th dose independent rect. 7 2
814 52.56 atmosphere 1015.0 720 < th dose independent rect. 7 2
815 52.56 precipitation 0.1 720 < th dose independent rect. 19 2
816 52.56 precipitation 0.1 720 < th dose independent rect. 1 8
817 52.56 temperature 10.0 720 > th dose independent rect. 9 22
818 52.56 precipitation 0.1 720 < th dose independent rect. 21 22
820 52.56 precipitation 0.1 720 < th dose dependent rect. 19 2
821 52.56 precipitation 0.1 720 < th dose dependent rect. 1 8
822 52.56 precipitation 0.1 720 < th dose dependent rect. 21 22
823 52.57 temperature 10.0 720 > th dose independent rect. 19 2
824 52.57 temperature 30.0 720 < th dose independent rect. 19 2
825 52.57 humidity 50.0 720 > th dose independent rect. 19 2
826 52.57 atmosphere 995.0 720 > th dose independent rect. 19 2
827 52.57 radiation 1.0 720 < th dose independent rect. 19 2
834 52.57 radiation 1.0 720 < th dose dependent rect. 19 2
842 52.57 temperature 10.0 30 > th dose dependent rect. 21 23
854 52.59 wind 9.0 720 < th dose independent rect. 19 2
903 52.60 radiation 10.0 720 < th dose independent rect. 17 4
922 52.62 radiation 20.0 720 < th dose dependent rect. 17 4
936 52.65 temperature 30.0 720 < th dose independent rect. 17 4
942 52.66 wind 9.0 720 < th dose independent rect. 1 8
953 52.68 radiation 40.0 90 < th dose dependent rect. 21 12
954 52.69 temperature 30.0 720 < th dose independent rect. 7 2
955 52.69 temperature 10.0 720 > th dose independent rect. 1 8
956 52.69 humidity 50.0 720 > th dose independent rect. 1 8
957 52.69 atmosphere 995.0 720 > th dose independent rect. 1 8
959 52.69 temperature 10.0 720 > th dose independent rect. 9 16
965 52.70 atmosphere 1015.0 720 < th dose independent rect. 19 2
970 52.70 precipitation 0.1 720 < th dose independent rect. 21 20
976 52.70 precipitation 0.1 720 < th dose dependent rect. 21 20
981 52.71 wind 5.0 90 < th dose independent rect. 21 12
982 52.71 atmosphere 995.0 720 > th dose independent rect. 9 16
983 52.71 atmosphere 995.0 720 > th dose independent rect. 9 22
992 52.72 wind 7.0 720 < th dose independent rect. 5 4