Os09g0322000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PaMst-1.
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Os09g0322000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PaMst-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.86 | 0.308 | 12.3 | 1.07 | 1.03 | -1.08 | 1.07 | 1.57 | 0.313 | 18.4 | 24.1 | 821 | -- | -- |
| 43.75 | 0.308 | 12.3 | 0.758 | 1.05 | -0.969 | 1.35 | -- | 0.226 | 18.4 | 24.1 | 789 | -- | -- |
| 45.21 | 0.313 | 12.2 | 1.17 | 1.02 | -1.08 | -- | 2.2 | 0.35 | 18.2 | 23.97 | 821 | -- | -- |
| 47.35 | 0.32 | 12.3 | 0.714 | 0.972 | -0.861 | -- | -- | 0.231 | 18.1 | 24.04 | 847 | -- | -- |
| 80.2 | 0.417 | 12.2 | 1.34 | -- | -0.972 | -- | 2.22 | 0.382 | -- | 23 | 1195 | -- | -- |
| 63.49 | 0.374 | 12.3 | 0.511 | 0.8 | -- | 0.658 | -- | 0.121 | 17.5 | -- | -- | -- | -- |
| 64.37 | 0.376 | 12.3 | 0.51 | 0.804 | -- | -- | -- | 0.125 | 17.2 | -- | -- | -- | -- |
| 81.38 | 0.42 | 12.3 | 0.833 | -- | -0.713 | -- | -- | 0.258 | -- | 22.63 | 5599 | -- | -- |
| 60.21 | 0.361 | 12.3 | -- | 0.941 | -0.677 | -- | -- | 0.115 | 18 | 24.52 | 827 | -- | -- |
| 98.17 | 0.463 | 12.3 | 0.482 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 71.22 | 0.395 | 12.3 | -- | 0.795 | -- | -- | -- | 0.068 | 17.2 | -- | -- | -- | -- |
| 90.95 | 0.444 | 12.3 | -- | -- | -0.588 | -- | -- | 0.12 | -- | 24.17 | 1258 | -- | -- |
| 104.3 | 0.477 | 12.3 | -- | -- | -- | -- | -- | 0.0512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 23 | 42.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 31 | 42.99 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 36 | 43.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 7 |
| 43 | 43.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 52 | 43.20 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 57 | 43.25 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 59 | 43.27 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 5 |
| 78 | 43.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 126 | 43.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 146 | 43.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 179 | 43.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 215 | 44.08 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 14 |
| 217 | 44.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 220 | 44.09 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 222 | 44.12 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 225 | 44.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 229 | 44.14 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 233 | 44.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 4 | 22 |
| 250 | 44.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 258 | 44.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 276 | 44.27 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 283 | 44.30 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 296 | 44.33 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 21 |
| 320 | 44.40 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 355 | 44.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 420 | 44.75 | temperature | 10 | 270 | > th | dose dependent | sin | 16 | NA |
| 431 | 44.79 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 13 |
| 538 | 45.24 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 13 |
| 573 | 45.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 14 |
| 613 | 45.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 659 | 45.59 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 18 |
| 662 | 45.60 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 687 | 45.64 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 20 |
| 692 | 45.65 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 704 | 45.68 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 708 | 45.69 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 18 |
| 712 | 45.70 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 6 |
| 779 | 45.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 793 | 45.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 806 | 45.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 830 | 46.00 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 3 |
| 831 | 46.00 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 848 | 46.04 | temperature | 30 | 720 | < th | dose independent | sin | 1 | NA |
| 920 | 46.19 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 14 |
| 938 | 46.23 | temperature | 30 | 720 | < th | dose independent | sin | 20 | NA |