Os09g0321900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).
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Os09g0321900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2 M (EC 6.3.2.19) (Ubiquitin-protein ligase M) (Ubiquitin carrier protein M) (Nedd8-conjugating enzyme Ubc12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.66 | 0.381 | 8.52 | 0.431 | 0.462 | 0.302 | 0.755 | -1.24 | 0.593 | 1.09 | 22.2 | 49 | -- | -- |
| 72.25 | 0.399 | 8.56 | 0.0424 | 0.455 | 0.302 | -0.0429 | -- | 0.496 | 1.58 | 22.2 | 112 | -- | -- |
| 67.22 | 0.382 | 8.52 | 0.355 | 0.457 | 0.312 | -- | -0.931 | 0.603 | 1.32 | 22.2 | 30 | -- | -- |
| 71.79 | 0.395 | 8.56 | 0.0582 | 0.465 | 0.328 | -- | -- | 0.499 | 1.32 | 21.85 | 111 | -- | -- |
| 77.63 | 0.41 | 8.52 | 0.347 | -- | 0.464 | -- | -0.907 | 0.613 | -- | 22.25 | 11 | -- | -- |
| 77.46 | 0.413 | 8.58 | -0.0486 | 0.56 | -- | -0.0395 | -- | 0.407 | 1.34 | -- | -- | -- | -- |
| 77.46 | 0.412 | 8.58 | -0.0472 | 0.56 | -- | -- | -- | 0.407 | 1.33 | -- | -- | -- | -- |
| 83.01 | 0.424 | 8.54 | 0.168 | -- | 0.502 | -- | -- | 0.543 | -- | 21.7 | 14 | -- | -- |
| 71.89 | 0.395 | 8.56 | -- | 0.467 | 0.322 | -- | -- | 0.496 | 1.28 | 21.8 | 109 | -- | -- |
| 96.82 | 0.46 | 8.57 | -0.0253 | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
| 77.52 | 0.412 | 8.58 | -- | 0.559 | -- | -- | -- | 0.412 | 1.33 | -- | -- | -- | -- |
| 83.28 | 0.425 | 8.55 | -- | -- | 0.472 | -- | -- | 0.527 | -- | 21.6 | 13 | -- | -- |
| 96.83 | 0.459 | 8.57 | -- | -- | -- | -- | -- | 0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.30 | temperature | 25 | 10 | < th | dose dependent | sin | 5 | NA |
| 4 | 65.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 14 | 66.45 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 18 | 66.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 21 | 66.76 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 26 | 66.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 27 | 66.83 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 29 | 66.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 30 | 66.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 35 | 66.87 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 39 | 66.90 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 19 |
| 41 | 66.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 45 | 66.93 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 63 | 66.99 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 76 | 67.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 84 | 67.07 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 90 | 67.12 | temperature | 20 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 102 | 67.19 | temperature | 20 | 10 | < th | dose independent | sin | 4 | NA |
| 108 | 67.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 113 | 67.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 129 | 67.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 240 | 67.74 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 23 |
| 263 | 67.81 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 23 |
| 289 | 67.93 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 12 |
| 298 | 67.96 | temperature | 20 | 270 | > th | dose independent | rect. | 24 | 14 |
| 342 | 68.11 | temperature | 20 | 90 | > th | dose independent | sin | 3 | NA |
| 355 | 68.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 18 |
| 378 | 68.22 | temperature | 20 | 10 | > th | dose independent | sin | 3 | NA |
| 432 | 68.32 | temperature | 20 | 90 | > th | dose independent | rect. | 24 | 23 |
| 447 | 68.35 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 468 | 68.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 15 |
| 530 | 68.49 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 14 |
| 534 | 68.50 | temperature | 20 | 90 | > th | dose independent | rect. | 2 | 16 |
| 544 | 68.51 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 13 |
| 548 | 68.51 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 588 | 68.57 | humidity | 90 | 270 | > th | dose independent | rect. | 6 | 13 |
| 601 | 68.59 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 613 | 68.61 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 22 |
| 634 | 68.64 | temperature | 20 | 10 | < th | dose independent | rect. | 24 | 16 |
| 697 | 68.71 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 12 |
| 706 | 68.72 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 22 |
| 728 | 68.74 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 23 |
| 747 | 68.76 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 21 |
| 772 | 68.79 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 789 | 68.81 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 23 |
| 828 | 68.86 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 859 | 68.88 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 880 | 68.90 | temperature | 20 | 10 | < th | dose independent | rect. | 2 | 11 |
| 903 | 68.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 916 | 68.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 917 | 68.93 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 924 | 68.94 | humidity | 90 | 270 | > th | dose independent | rect. | 6 | 8 |
| 953 | 68.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |